RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 ADH7P40394 386 aa19.35■□□□□ 0.69
HMGB3-205ENST00000455596 TFF3Q07654 80 aa19.35■□□□□ 0.69
HMGB3-205ENST00000455596 HSPB3Q12988 150 aa19.35■□□□□ 0.69
HMGB3-205ENST00000455596 ZNHIT3Q15649 155 aaPredicted RBP19.35■□□□□ 0.69
HMGB3-205ENST00000455596 RIPPLY2Q5TAB7 128 aa19.35■□□□□ 0.69
HMGB3-205ENST00000455596 ANKRD26P1Q6NSI1 321 aa19.35■□□□□ 0.69
HMGB3-205ENST00000455596 WDSUB1Q8N9V3 476 aa19.35■□□□□ 0.69
HMGB3-205ENST00000455596 ZFP28Q8NHY6 868 aa19.35■□□□□ 0.69
HMGB3-205ENST00000455596 EFHD2Q96C19 240 aaPredicted RBP19.35■□□□□ 0.69
HMGB3-205ENST00000455596 PPCDCQ96CD2 204 aa19.35■□□□□ 0.69
HMGB3-205ENST00000455596 PPP3R2Q96LZ3 170 aa19.35■□□□□ 0.69
HMGB3-205ENST00000455596 PRDM14Q9GZV8 571 aa19.35■□□□□ 0.69
HMGB3-205ENST00000455596 SERHLQ9NQF3 203 aa19.35■□□□□ 0.69
HMGB3-205ENST00000455596 KIAA1549Q9HCM3 1950 aa19.35■□□□□ 0.69
HMGB3-205ENST00000455596 INTS1Q8N201 2190 aaKnown RBP19.34■□□□□ 0.69
HMGB3-205ENST00000455596 RGS16O15492 202 aaPredicted RBP19.34■□□□□ 0.69
HMGB3-205ENST00000455596 AKAP10O43572 662 aa19.34■□□□□ 0.69
HMGB3-205ENST00000455596 GPC1P35052 558 aa19.34■□□□□ 0.69
HMGB3-205ENST00000455596 ASMTP46597 345 aa19.34■□□□□ 0.69
HMGB3-205ENST00000455596 ZNF844Q08AG5 666 aa19.34■□□□□ 0.69
HMGB3-205ENST00000455596 SF3B4Q15427 424 aaKnown RBP eCLIP19.34■□□□□ 0.69
HMGB3-205ENST00000455596 CYP27C1Q4G0S4 372 aa19.34■□□□□ 0.69
HMGB3-205ENST00000455596 ZNF551Q7Z340 670 aaPredicted RBP19.34■□□□□ 0.69
HMGB3-205ENST00000455596 YRDCQ86U90 279 aaKnown RBP19.34■□□□□ 0.69
HMGB3-205ENST00000455596 PLCZ1Q86YW0 608 aa19.34■□□□□ 0.69
HMGB3-205ENST00000455596 ZNF295-AS1Q8N0V1 137 aa19.34■□□□□ 0.69
HMGB3-205ENST00000455596 CLHC1Q8NHS4 586 aa19.34■□□□□ 0.69
HMGB3-205ENST00000455596 ABTB1Q969K4 478 aaPredicted RBP19.34■□□□□ 0.69
HMGB3-205ENST00000455596 CIDECQ96AQ7 238 aaPredicted RBP19.34■□□□□ 0.69
HMGB3-205ENST00000455596 UGT2B28Q9BY64 529 aa19.34■□□□□ 0.69
HMGB3-205ENST00000455596 Q9N2J8 555 aa19.34■□□□□ 0.69
HMGB3-205ENST00000455596 SH3BP4Q9P0V3 963 aa19.34■□□□□ 0.69
HMGB3-205ENST00000455596 BAIAP2L1Q9UHR4 511 aa19.34■□□□□ 0.69
HMGB3-205ENST00000455596 RAB21Q9UL25 225 aa19.34■□□□□ 0.69
HMGB3-205ENST00000455596 CBLCQ9ULV8 474 aa19.34■□□□□ 0.69
HMGB3-205ENST00000455596 CAMK2AQ9UQM7 478 aa19.34■□□□□ 0.69
HMGB3-205ENST00000455596 ESPNB1AK53 854 aa19.33■□□□□ 0.68
HMGB3-205ENST00000455596 TMEM114B3SHH9 223 aa19.33■□□□□ 0.68
HMGB3-205ENST00000455596 CTIFO43310 598 aaKnown RBP19.33■□□□□ 0.68
HMGB3-205ENST00000455596 EPPINO95925 133 aa19.33■□□□□ 0.68
HMGB3-205ENST00000455596 ACTL6AO96019 429 aa19.33■□□□□ 0.68
HMGB3-205ENST00000455596 MSX1P28360 303 aa19.33■□□□□ 0.68
HMGB3-205ENST00000455596 MAPK1P28482 360 aa19.33■□□□□ 0.68
HMGB3-205ENST00000455596 SSTR2P30874 369 aa19.33■□□□□ 0.68
HMGB3-205ENST00000455596 ETV4P43268 484 aa19.33■□□□□ 0.68
HMGB3-205ENST00000455596 DECR1Q16698 335 aa19.33■□□□□ 0.68
HMGB3-205ENST00000455596 ACSF3Q4G176 576 aaPredicted RBP19.33■□□□□ 0.68
HMGB3-205ENST00000455596 ZNF385BQ569K4 471 aa19.33■□□□□ 0.68
HMGB3-205ENST00000455596 NUDCD3Q8IVD9 361 aa19.33■□□□□ 0.68
HMGB3-205ENST00000455596 OR14L1PQ8NHC6 308 aa19.33■□□□□ 0.68
HMGB3-205ENST00000455596 RNF138Q8WVD3 245 aa19.33■□□□□ 0.68
HMGB3-205ENST00000455596 MTERF3Q96E29 417 aa19.33■□□□□ 0.68
HMGB3-205ENST00000455596 ZBED6CLQ96FA7 236 aaPredicted RBP19.33■□□□□ 0.68
HMGB3-205ENST00000455596 TREX2Q9BQ50 279 aaPredicted RBP19.33■□□□□ 0.68
HMGB3-205ENST00000455596 LMF2Q9BU23 707 aaKnown RBP19.33■□□□□ 0.68
HMGB3-205ENST00000455596 OR2B2Q9GZK3 357 aa19.33■□□□□ 0.68
HMGB3-205ENST00000455596 NPDC1Q9NQX5 325 aaPredicted RBP19.33■□□□□ 0.68
HMGB3-205ENST00000455596 MRTO4Q9UKD2 239 aaKnown RBP19.33■□□□□ 0.68
HMGB3-205ENST00000455596 PCNX3Q9H6A9 2034 aa19.33■□□□□ 0.68
HMGB3-205ENST00000455596 DOCK7Q96N67 2140 aa19.33■□□□□ 0.68
HMGB3-205ENST00000455596 TTC36A6NLP5 189 aa19.32■□□□□ 0.68
HMGB3-205ENST00000455596 HSPB2A8KAH6 182 aa19.32■□□□□ 0.68
HMGB3-205ENST00000455596 BCKDHAP12694 445 aa19.32■□□□□ 0.68
HMGB3-205ENST00000455596 CYP4B1P13584 511 aa19.32■□□□□ 0.68
HMGB3-205ENST00000455596 DDX5P17844 614 aaKnown RBP19.32■□□□□ 0.68
HMGB3-205ENST00000455596 ARRB2P32121 409 aa19.32■□□□□ 0.68
HMGB3-205ENST00000455596 FRKP42685 505 aaPredicted RBP19.32■□□□□ 0.68
HMGB3-205ENST00000455596 MANFP55145 182 aaKnown RBP19.32■□□□□ 0.68
HMGB3-205ENST00000455596 GAB1Q13480 694 aa19.32■□□□□ 0.68
HMGB3-205ENST00000455596 PDE7AQ13946 482 aa19.32■□□□□ 0.68
HMGB3-205ENST00000455596 HSPB2Q16082 182 aa19.32■□□□□ 0.68
HMGB3-205ENST00000455596 ATP6AP1LQ52LC2 224 aa19.32■□□□□ 0.68
HMGB3-205ENST00000455596 XKR7Q5GH72 579 aa19.32■□□□□ 0.68
HMGB3-205ENST00000455596 DCST1Q5T197 706 aa19.32■□□□□ 0.68
HMGB3-205ENST00000455596 LRIG3Q6UXM1 1119 aa19.32■□□□□ 0.68
HMGB3-205ENST00000455596 SEM1Q6ZVN7 128 aa19.32■□□□□ 0.68
HMGB3-205ENST00000455596 R3HCC1LQ7Z5L2 792 aaKnown RBP19.32■□□□□ 0.68
HMGB3-205ENST00000455596 WDR53Q7Z5U6 358 aaPredicted RBP19.32■□□□□ 0.68
HMGB3-205ENST00000455596 LACC1Q8IV20 430 aa19.32■□□□□ 0.68
HMGB3-205ENST00000455596 LIX1LQ8IVB5 337 aa19.32■□□□□ 0.68
HMGB3-205ENST00000455596 OR6Y1Q8NGX8 325 aa19.32■□□□□ 0.68
HMGB3-205ENST00000455596 PPP1R14CQ8TAE6 165 aa19.32■□□□□ 0.68
HMGB3-205ENST00000455596 C14orf79Q96F83 325 aa19.32■□□□□ 0.68
HMGB3-205ENST00000455596 WDYHV1Q96HA8 205 aa19.32■□□□□ 0.68
HMGB3-205ENST00000455596 C3orf14Q9HBI5 128 aa19.32■□□□□ 0.68
HMGB3-205ENST00000455596 ZDHHC2Q9UIJ5 367 aa19.32■□□□□ 0.68
HMGB3-205ENST00000455596 TEX15Q9BXT5 2789 aa19.32■□□□□ 0.68
HMGB3-205ENST00000455596 PEX11AO75192 247 aa19.31■□□□□ 0.68
HMGB3-205ENST00000455596 SKAP2O75563 359 aaPredicted RBP19.31■□□□□ 0.68
HMGB3-205ENST00000455596 PRPS2P11908 318 aa19.31■□□□□ 0.68
HMGB3-205ENST00000455596 IGFBP2P18065 325 aa19.31■□□□□ 0.68
HMGB3-205ENST00000455596 GRK2P25098 689 aa19.31■□□□□ 0.68
HMGB3-205ENST00000455596 SRD5A2P31213 254 aa19.31■□□□□ 0.68
HMGB3-205ENST00000455596 EVI2BP34910 448 aa19.31■□□□□ 0.68
HMGB3-205ENST00000455596 GAS1P54826 345 aa19.31■□□□□ 0.68
HMGB3-205ENST00000455596 PSMD4P55036 377 aaKnown RBP19.31■□□□□ 0.68
HMGB3-205ENST00000455596 SLC25A35Q3KQZ1 300 aa19.31■□□□□ 0.68
HMGB3-205ENST00000455596 IFNEQ86WN2 208 aa19.31■□□□□ 0.68
HMGB3-205ENST00000455596 SSU72Q9NP77 194 aaKnown RBP19.31■□□□□ 0.68
HMGB3-205ENST00000455596 ACSS1Q9NUB1 689 aaPredicted RBP19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms