RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 AGFG1P52594 562 aaKnown RBP18.86■□□□□ 0.61
SDC1-205ENST00000447124 GAB1Q13480 694 aa18.86■□□□□ 0.61
SDC1-205ENST00000447124 EFR3AQ14156 821 aa18.86■□□□□ 0.61
SDC1-205ENST00000447124 TESK1Q15569 626 aa18.86■□□□□ 0.61
SDC1-205ENST00000447124 CES4AQ5XG92 561 aa18.86■□□□□ 0.61
SDC1-205ENST00000447124 ZPLD1Q8TCW7 415 aa18.86■□□□□ 0.61
SDC1-205ENST00000447124 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.86■□□□□ 0.618e-8■■■■■ 27.2
SDC1-205ENST00000447124 ELP4Q96EB1 424 aa18.86■□□□□ 0.61
SDC1-205ENST00000447124 SH3GL2Q99962 352 aa18.86■□□□□ 0.61
SDC1-205ENST00000447124 CALHM2Q9HA72 323 aa18.86■□□□□ 0.61
SDC1-205ENST00000447124 MIEF1Q9NQG6 463 aa18.86■□□□□ 0.61
SDC1-205ENST00000447124 FLRT3Q9NZU0 649 aa18.86■□□□□ 0.61
SDC1-205ENST00000447124 WIF1Q9Y5W5 379 aa18.86■□□□□ 0.61
SDC1-205ENST00000447124 MBD3L4A6NDZ8 208 aaPredicted RBP18.85■□□□□ 0.61
SDC1-205ENST00000447124 MBD3L3A6NE82 208 aaPredicted RBP18.85■□□□□ 0.61
SDC1-205ENST00000447124 MBD3L5A6NJ08 208 aaPredicted RBP18.85■□□□□ 0.61
SDC1-205ENST00000447124 SLC28A1O00337 649 aa18.85■□□□□ 0.61
SDC1-205ENST00000447124 AZIN1O14977 448 aa18.85■□□□□ 0.61
SDC1-205ENST00000447124 TRIM13O60858 407 aa18.85■□□□□ 0.61
SDC1-205ENST00000447124 CYP4B1P13584 511 aa18.85■□□□□ 0.61
SDC1-205ENST00000447124 GFRA1P56159 465 aa18.85■□□□□ 0.61
SDC1-205ENST00000447124 MYBPHQ13203 477 aa18.85■□□□□ 0.61
SDC1-205ENST00000447124 PLXDC2Q6UX71 529 aa18.85■□□□□ 0.61
SDC1-205ENST00000447124 ZNF551Q7Z340 670 aaPredicted RBP18.85■□□□□ 0.61
SDC1-205ENST00000447124 CDH24Q86UP0 819 aa18.85■□□□□ 0.61
SDC1-205ENST00000447124 OR2L13Q8N349 312 aa18.85■□□□□ 0.61
SDC1-205ENST00000447124 BANPQ8N9N5 519 aa18.85■□□□□ 0.61
SDC1-205ENST00000447124 C9orf106Q8NAJ2 232 aa18.85■□□□□ 0.61
SDC1-205ENST00000447124 OR14L1PQ8NHC6 308 aa18.85■□□□□ 0.61
SDC1-205ENST00000447124 MBD3L2Q8NHZ7 208 aaPredicted RBP18.85■□□□□ 0.61
SDC1-205ENST00000447124 GFM2Q969S9 779 aaKnown RBP18.85■□□□□ 0.61
SDC1-205ENST00000447124 METTL2AQ96IZ6 378 aaKnown RBP18.85■□□□□ 0.61
SDC1-205ENST00000447124 TUBA1CQ9BQE3 449 aa18.85■□□□□ 0.61
SDC1-205ENST00000447124 RTN4RQ9BZR6 473 aa18.85■□□□□ 0.61
SDC1-205ENST00000447124 LRTM1Q9HBL6 345 aa18.85■□□□□ 0.61
SDC1-205ENST00000447124 C1orf109Q9NX04 203 aa18.85■□□□□ 0.61
SDC1-205ENST00000447124 SENP1Q9P0U3 644 aa18.85■□□□□ 0.61
SDC1-205ENST00000447124 ZNF629Q9UEG4 869 aaPredicted RBP18.85■□□□□ 0.61
SDC1-205ENST00000447124 ANKRD17O75179 2603 aaKnown RBP18.85■□□□□ 0.61
SDC1-205ENST00000447124 PCNX3Q9H6A9 2034 aa18.84■□□□□ 0.61
SDC1-205ENST00000447124 DVL2O14641 736 aa18.84■□□□□ 0.61
SDC1-205ENST00000447124 FADS1O60427 444 aa18.84■□□□□ 0.61
SDC1-205ENST00000447124 GRK2P25098 689 aa18.84■□□□□ 0.61
SDC1-205ENST00000447124 IL12BP29460 328 aa18.84■□□□□ 0.61
SDC1-205ENST00000447124 ALDH3A1P30838 453 aa18.84■□□□□ 0.61
SDC1-205ENST00000447124 SRD5A2P31213 254 aa18.84■□□□□ 0.61
SDC1-205ENST00000447124 VSNL1P62760 191 aa18.84■□□□□ 0.61
SDC1-205ENST00000447124 ZNF155Q12901 538 aaPredicted RBP18.84■□□□□ 0.61
SDC1-205ENST00000447124 SF3B4Q15427 424 aaKnown RBP eCLIP18.84■□□□□ 0.61
SDC1-205ENST00000447124 UGT3A2Q3SY77 523 aa18.84■□□□□ 0.61
SDC1-205ENST00000447124 RFTN2Q52LD8 501 aaPredicted RBP18.84■□□□□ 0.61
SDC1-205ENST00000447124 SH2D4BQ5SQS7 431 aa18.84■□□□□ 0.61
SDC1-205ENST00000447124 ANKRD26P1Q6NSI1 321 aa18.84■□□□□ 0.61
SDC1-205ENST00000447124 IKBIPQ70UQ0 350 aa18.84■□□□□ 0.61
SDC1-205ENST00000447124 ADGRE4PQ86SQ3 457 aa18.84■□□□□ 0.61
SDC1-205ENST00000447124 TRABD2AQ86V40 505 aa18.84■□□□□ 0.61
SDC1-205ENST00000447124 NRGNQ92686 78 aa18.84■□□□□ 0.61
SDC1-205ENST00000447124 FCRL1Q96LA6 429 aa18.84■□□□□ 0.61
SDC1-205ENST00000447124 DOCK7Q96N67 2140 aa18.84■□□□□ 0.61
SDC1-205ENST00000447124 G6PC3Q9BUM1 346 aa18.84■□□□□ 0.61
SDC1-205ENST00000447124 TAS2R10Q9NYW0 307 aa18.84■□□□□ 0.61
SDC1-205ENST00000447124 MRPS18CQ9Y3D5 142 aaKnown RBP18.84■□□□□ 0.61
SDC1-205ENST00000447124 FIS1Q9Y3D6 152 aa18.84■□□□□ 0.61
SDC1-205ENST00000447124 OR10H1Q9Y4A9 318 aa18.84■□□□□ 0.61
SDC1-205ENST00000447124 ANKHD1Q8IWZ3 2542 aaKnown RBP18.84■□□□□ 0.61
SDC1-205ENST00000447124 COQ9O75208 318 aa18.83■□□□□ 0.6
SDC1-205ENST00000447124 LINC00032P0C843 101 aa18.83■□□□□ 0.6
SDC1-205ENST00000447124 CTSSP25774 331 aa18.83■□□□□ 0.6
SDC1-205ENST00000447124 UQCRC1P31930 480 aa18.83■□□□□ 0.6
SDC1-205ENST00000447124 KRT20P35900 424 aa18.83■□□□□ 0.6
SDC1-205ENST00000447124 LHX2P50458 406 aa18.83■□□□□ 0.6
SDC1-205ENST00000447124 PSPHP78330 225 aa18.83■□□□□ 0.6
SDC1-205ENST00000447124 SRYQ05066 204 aa18.83■□□□□ 0.6
SDC1-205ENST00000447124 FBXL19-AS1Q494R0 122 aa18.83■□□□□ 0.6
SDC1-205ENST00000447124 CYP27C1Q4G0S4 372 aa18.83■□□□□ 0.6
SDC1-205ENST00000447124 ZNF385BQ569K4 471 aa18.83■□□□□ 0.6
SDC1-205ENST00000447124 ZZZ3Q8IYH5 903 aa18.83■□□□□ 0.6
SDC1-205ENST00000447124 RNASE6Q93091 150 aaKnown RBP18.83■□□□□ 0.6
SDC1-205ENST00000447124 MKS1Q9NXB0 559 aa18.83■□□□□ 0.6
SDC1-205ENST00000447124 SLC17A7Q9P2U7 560 aa18.83■□□□□ 0.6
SDC1-205ENST00000447124 BAIAP2L1Q9UHR4 511 aa18.83■□□□□ 0.6
SDC1-205ENST00000447124 CBLCQ9ULV8 474 aa18.83■□□□□ 0.6
SDC1-205ENST00000447124 DNAJC15Q9Y5T4 150 aa18.83■□□□□ 0.6
SDC1-205ENST00000447124 CELSR1Q9NYQ6 3014 aa18.83■□□□□ 0.6
SDC1-205ENST00000447124 RGS14O43566 566 aa18.82■□□□□ 0.6
SDC1-205ENST00000447124 SLITRK5O94991 958 aa18.82■□□□□ 0.6
SDC1-205ENST00000447124 CHRNGP07510 517 aa18.82■□□□□ 0.6
SDC1-205ENST00000447124 FGF4P08620 206 aa18.82■□□□□ 0.6
SDC1-205ENST00000447124 NUDT17P0C025 328 aa18.82■□□□□ 0.6
SDC1-205ENST00000447124 SDC1P18827 310 aa18.82■□□□□ 0.6
SDC1-205ENST00000447124 NTSP30990 170 aa18.82■□□□□ 0.6
SDC1-205ENST00000447124 KIR2DL3P43628 341 aa18.82■□□□□ 0.6
SDC1-205ENST00000447124 ASCL1P50553 236 aa18.82■□□□□ 0.6
SDC1-205ENST00000447124 B3GALT5-AS1P59052 145 aa18.82■□□□□ 0.6
SDC1-205ENST00000447124 FOXF2Q12947 444 aa18.82■□□□□ 0.6
SDC1-205ENST00000447124 KANK2Q63ZY3 851 aa18.82■□□□□ 0.6
SDC1-205ENST00000447124 RNF165Q6ZSG1 346 aa18.82■□□□□ 0.6
SDC1-205ENST00000447124 CIDECQ96AQ7 238 aaPredicted RBP18.82■□□□□ 0.6
SDC1-205ENST00000447124 APOPT1Q96IL0 206 aa18.82■□□□□ 0.6
SDC1-205ENST00000447124 LMF2Q9BU23 707 aaKnown RBP18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms