RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 ADAMTSL4Q6UY14 1074 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 ZSCAN2Q7Z7L9 614 aaPredicted RBP7.85□□□□□ -1.15
CD44-208ENST00000428726 ANKRD13BQ86YJ7 626 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 OR8H2Q8N162 312 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 OR51A7Q8NH64 312 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 TMEM255BQ8WV15 326 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 TOE1Q96GM8 510 aaKnown RBP7.85□□□□□ -1.15
CD44-208ENST00000428726 PTCHD1Q96NR3 888 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 OR2M4Q96R27 311 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 PITX2Q99697 317 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 ZNF559Q9BR84 538 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 TEX101Q9BY14 249 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 FOXQ1Q9C009 403 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 PRDM7Q9NQW5 492 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 SPATA7Q9P0W8 599 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 SLC13A4Q9UKG4 626 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 HCN4Q9Y3Q4 1203 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 PCDHGA2Q9Y5H1 932 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 ENPP4Q9Y6X5 453 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 CNOT1A5YKK6 2376 aaKnown RBP7.85□□□□□ -1.15
CD44-208ENST00000428726 MUC22E2RYF6 1773 aaPredicted RBP7.85□□□□□ -1.15
CD44-208ENST00000428726 H1F0P07305 194 aaKnown RBP7.85□□□□□ -1.15
CD44-208ENST00000428726 CTSEP14091 401 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 SLC9A3P48764 834 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 COPZ1P61923 177 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 CSNK2BP67870 215 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 SFSWAPQ12872 951 aaKnown RBP7.85□□□□□ -1.15
CD44-208ENST00000428726 SELENBP1Q13228 472 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 GINS1Q14691 196 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 ARHGAP19Q14CB8 494 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 UBXN2BQ14CS0 331 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 ZIC1Q15915 447 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 MAPK14Q16539 360 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 DGUOKQ16854 277 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 ZNF630Q2M218 657 aaPredicted RBP7.85□□□□□ -1.15
CD44-208ENST00000428726 PLEKHG7Q6ZR37 379 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 CCDC80Q76M96 950 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 OR4F15Q8NGB8 312 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 OR9Q1Q8NGQ5 310 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 GPR151Q8TDV0 419 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 BCL7BQ9BQE9 202 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 FBXL4Q9UKA2 621 aa7.85□□□□□ -1.15
CD44-208ENST00000428726 ZNF346Q9UL40 294 aaKnown RBP7.85□□□□□ -1.15
CD44-208ENST00000428726 GPC6Q9Y625 555 aaPredicted RBP7.85□□□□□ -1.15
CD44-208ENST00000428726 DENND4AQ7Z401 1863 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 GXYLT2A0PJZ3 443 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 C4orf47A7E2U8 309 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 SNPHO15079 494 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 FCER2P06734 321 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 CT62P0C5K7 136 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 ADORA3P0DMS8 318 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 CLUP10909 449 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 ITGA2P17301 1181 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 CXCR2P25025 360 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 ELAVL4P26378 380 aaKnown RBP7.84□□□□□ -1.15
CD44-208ENST00000428726 NTSP30990 170 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 TRIM23P36406 574 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 MAGEA8P43361 318 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 XCR1P46094 333 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 EEF1A2Q05639 463 aaKnown RBP7.84□□□□□ -1.15
CD44-208ENST00000428726 ALG11Q2TAA5 492 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 DEFB133Q30KQ1 61 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 PROX2Q3B8N5 592 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 SLC30A8Q8IWU4 369 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 SLC22A18ASQ8N1D0 253 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 SVOPQ8N4V2 548 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 ADAMTS15Q8TE58 950 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 IPCEF1Q8WWN9 437 aaPredicted RBP7.84□□□□□ -1.15
CD44-208ENST00000428726 GEMIN6Q8WXD5 167 aaKnown RBP7.84□□□□□ -1.15
CD44-208ENST00000428726 PEX11GQ96HA9 241 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 LRR1Q96L50 414 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 FOXN4Q96NZ1 517 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 OR7D2Q96RA2 312 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 GABARAPL3Q9BY60 117 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 PELI2Q9HAT8 420 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 SEMA4GQ9NTN9 838 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 TBCCD1Q9NVR7 557 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 NDOR1Q9UHB4 597 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 WBP11Q9Y2W2 641 aaKnown RBP7.84□□□□□ -1.15
CD44-208ENST00000428726 TLR4O00206 839 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 REM1O75628 298 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 SEMA3DO95025 777 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 GNSP15586 552 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 AHRP35869 848 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 CRISP1P54107 249 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 BTG2P78543 158 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 ZNF791Q3KP31 576 aaPredicted RBP7.84□□□□□ -1.15
CD44-208ENST00000428726 ZNF730Q6ZMV8 503 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 NRMQ8IXM6 262 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 PRR22Q8IZ63 422 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 CYP4Z2PQ8N1L4 340 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 NATD1Q8N6N6 113 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 SLC37A2Q8TED4 501 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 ORAI1Q96D31 301 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 SLC35A4Q96G79 324 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 HRASLS5Q96KN8 279 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 NKX3-1Q99801 234 aaPredicted RBP7.84□□□□□ -1.15
CD44-208ENST00000428726 CCDC3Q9BQI4 270 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 C1QTNF2Q9BXJ5 285 aa7.84□□□□□ -1.15
CD44-208ENST00000428726 NRSN2Q9GZP1 204 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms