RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, human

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-206	ENST00000413725	REP15	Q6BDI9	236 aa		12.13	□□□□□ -0.47
SF1-206	ENST00000413725	PCSK4	Q6UW60	755 aa		12.13	□□□□□ -0.47
SF1-206	ENST00000413725	LYPD8	Q6UX82	237 aa		12.13	□□□□□ -0.47
SF1-206	ENST00000413725	RNF130	Q86XS8	419 aa		12.13	□□□□□ -0.47
SF1-206	ENST00000413725	POU5F2	Q8N7G0	328 aa		12.13	□□□□□ -0.47
SF1-206	ENST00000413725	GOLM1	Q8NBJ4	401 aa		12.13	□□□□□ -0.47
SF1-206	ENST00000413725	SLC16A11	Q8NCK7	471 aa		12.13	□□□□□ -0.47
SF1-206	ENST00000413725	FAM13C	Q8NE31	585 aa		12.13	□□□□□ -0.47
SF1-206	ENST00000413725	MIPOL1	Q8TD10	442 aa		12.13	□□□□□ -0.47
SF1-206	ENST00000413725	TMBIM1	Q969X1	311 aa		12.13	□□□□□ -0.47
SF1-206	ENST00000413725	RMND5B	Q96G75	393 aa	Predicted RBP	12.13	□□□□□ -0.47
SF1-206	ENST00000413725	OR7D2	Q96RA2	312 aa		12.13	□□□□□ -0.47
SF1-206	ENST00000413725	OR51I1	Q9H343	314 aa		12.13	□□□□□ -0.47
SF1-206	ENST00000413725	TPT1P8	Q9HAU6	139 aa		12.13	□□□□□ -0.47
SF1-206	ENST00000413725	TIMMDC1	Q9NPL8	285 aa		12.13	□□□□□ -0.47
SF1-206	ENST00000413725	SLC6A13	Q9NSD5	602 aa		12.13	□□□□□ -0.47
SF1-206	ENST00000413725	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	12.13	□□□□□ -0.47
SF1-206	ENST00000413725	CORO2B	Q9UQ03	480 aa		12.13	□□□□□ -0.47
SF1-206	ENST00000413725	ZGRF1	Q86YA3	2104 aa		12.13	□□□□□ -0.47
SF1-206	ENST00000413725	HEATR5A	Q86XA9	2040 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	OR6C70	A6NIJ9	312 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	CLIC1	O00299	241 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	FBP2	O00757	339 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	ASNA1	O43681	348 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	HS6ST1	O60243	411 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	SLC25A12	O75746	678 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	NPPA	P01160	153 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	PIGA	P37287	484 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	CD97	P48960	835 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	POU6F2	P78424	691 aa	Predicted RBP	12.12	□□□□□ -0.47
SF1-206	ENST00000413725	GTF3C1	Q12789	2109 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	KLRB1	Q12918	225 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	EFR3A	Q14156	821 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	ZNF169	Q14929	603 aa	Predicted RBP	12.12	□□□□□ -0.47
SF1-206	ENST00000413725	TRMT5	Q32P41	509 aa	Known RBP	12.12	□□□□□ -0.47
SF1-206	ENST00000413725	GTDC1	Q4AE62	458 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	EXOSC6	Q5RKV6	272 aa	Known RBP	12.12	□□□□□ -0.47
SF1-206	ENST00000413725	ATAD3B	Q5T9A4	648 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	TNFAIP8L2	Q6P589	184 aa	Predicted RBP	12.12	□□□□□ -0.47
SF1-206	ENST00000413725		Q6ZS92	163 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	NUP54	Q7Z3B4	507 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	RETREG3	Q86VR2	466 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	TREML1	Q86YW5	311 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	RBMXL3	Q8N7X1	1067 aa	Known RBP	12.12	□□□□□ -0.47
SF1-206	ENST00000413725	BCORP1	Q8N888	145 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	TEX19	Q8NA77	164 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	TMEM178A	Q8NBL3	297 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	MDS2	Q8NDY4	140 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	CATSPER1	Q8NEC5	780 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	OR4N2	Q8NGD1	307 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	OR5D16	Q8NGK9	328 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	OR5M3	Q8NGP4	307 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	PNPT1	Q8TCS8	783 aa	Known RBP	12.12	□□□□□ -0.47
SF1-206	ENST00000413725	PIK3R3	Q92569	461 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	CDS1	Q92903	461 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	OTUB1	Q96FW1	271 aa	Predicted RBP	12.12	□□□□□ -0.47
SF1-206	ENST00000413725	AURKB	Q96GD4	344 aa	Predicted RBP	12.12	□□□□□ -0.47
SF1-206	ENST00000413725	COL21A1	Q96P44	957 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	SIGLEC12	Q96PQ1	595 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	BTBD2	Q9BX70	525 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	MFRP	Q9BY79	579 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	IL1RL2	Q9HB29	575 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	EXD2	Q9NVH0	621 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	GID8	Q9NWU2	228 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	VAPA	Q9P0L0	249 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	B3GNT3	Q9Y2A9	372 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	KLF13	Q9Y2Y9	288 aa	Predicted RBP	12.12	□□□□□ -0.47
SF1-206	ENST00000413725	CSAG2	Q9Y5P2	127 aa		12.12	□□□□□ -0.47
SF1-206	ENST00000413725	NCKAP5	O14513	1909 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	GXYLT2	A0PJZ3	443 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	EVPLL	A8MZ36	301 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	TSPAN2	O60636	221 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	NEURL1	O76050	574 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	IL33	O95760	270 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	AK1	P00568	194 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725		P04436	131 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	SP1	P08047	785 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	HOXB9	P17482	250 aa	Predicted RBP	12.11	□□□□□ -0.47
SF1-206	ENST00000413725	CRAT	P43155	626 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	RFX3	P48380	749 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	MAN2A2	P49641	1150 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	PNLIPRP2	P54317	469 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	CASP9	P55211	416 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	FBXW4	P57775	412 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	FADD	Q13158	208 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	ZNF766	Q5HY98	468 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	SLC22A10	Q63ZE4	541 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	FAM91A1	Q658Y4	838 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	SPINK14	Q6IE38	97 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	DLEU7	Q6UYE1	221 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	C16orf62	Q7Z3J2	963 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	PSD4	Q8NDX1	1056 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	OR10G3	Q8NGC4	313 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	OR52N2	Q8NGI0	321 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	DIO2	Q92813	273 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	PNPLA2	Q96AD5	504 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	EFHD2	Q96C19	240 aa	Predicted RBP	12.11	□□□□□ -0.47
SF1-206	ENST00000413725	RCN3	Q96D15	328 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	TMCO6	Q96DC7	493 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	SLC35A4	Q96G79	324 aa		12.11	□□□□□ -0.47

Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms