RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 ZNF578Q96N58 590 aaPredicted RBP12.7□□□□□ -0.38
LIMS1-205ENST00000410093 WDR12Q9GZL7 423 aaKnown RBP12.7□□□□□ -0.38
LIMS1-205ENST00000410093 HMG20AQ9NP66 347 aa12.7□□□□□ -0.38
LIMS1-205ENST00000410093 MKLN1Q9UL63 735 aa12.7□□□□□ -0.38
LIMS1-205ENST00000410093 MRPS33Q9Y291 106 aaKnown RBP12.7□□□□□ -0.38
LIMS1-205ENST00000410093 WDR45Q9Y484 360 aa12.7□□□□□ -0.38
LIMS1-205ENST00000410093 R4GN57 208 aa12.7□□□□□ -0.38
LIMS1-205ENST00000410093 LILRA5A6NI73 299 aa12.69□□□□□ -0.38
LIMS1-205ENST00000410093 H3BN98 237 aa12.69□□□□□ -0.38
LIMS1-205ENST00000410093 M0R3H8 397 aa12.69□□□□□ -0.38
LIMS1-205ENST00000410093 CYR61O00622 381 aa12.69□□□□□ -0.38
LIMS1-205ENST00000410093 FMO6PO60774 539 aa12.69□□□□□ -0.38
LIMS1-205ENST00000410093 STX11O75558 287 aa12.69□□□□□ -0.38
LIMS1-205ENST00000410093 SLC35E2P0CK97 266 aa12.69□□□□□ -0.38
LIMS1-205ENST00000410093 ZNF12P17014 697 aa12.69□□□□□ -0.38
LIMS1-205ENST00000410093 CXCL12P48061 93 aa12.69□□□□□ -0.38
LIMS1-205ENST00000410093 EMP3P54852 163 aa12.69□□□□□ -0.38
LIMS1-205ENST00000410093 RHAGQ02094 409 aa12.69□□□□□ -0.38
LIMS1-205ENST00000410093 CHRNEQ04844 493 aa12.69□□□□□ -0.38
LIMS1-205ENST00000410093 TSPAN31Q12999 210 aa12.69□□□□□ -0.38
LIMS1-205ENST00000410093 PIN1Q13526 163 aaPredicted RBP12.69□□□□□ -0.38
LIMS1-205ENST00000410093 ZNF846Q147U1 533 aa12.69□□□□□ -0.38
LIMS1-205ENST00000410093 C11orf91Q3C1V1 193 aa12.69□□□□□ -0.38
LIMS1-205ENST00000410093 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.69□□□□□ -0.38
LIMS1-205ENST00000410093 FHL5Q5TD97 284 aa12.69□□□□□ -0.38
LIMS1-205ENST00000410093 GARNL3Q5VVW2 1013 aa12.69□□□□□ -0.38
LIMS1-205ENST00000410093 Q6ZPB1 254 aaPredicted RBP12.69□□□□□ -0.38
LIMS1-205ENST00000410093 RANBP3LQ86VV4 465 aaPredicted RBP12.69□□□□□ -0.38
LIMS1-205ENST00000410093 B3GNT7Q8NFL0 401 aa12.69□□□□□ -0.38
LIMS1-205ENST00000410093 ZCCHC10Q8TBK6 192 aa12.69□□□□□ -0.38
LIMS1-205ENST00000410093 SLC35A4Q96G79 324 aa12.69□□□□□ -0.38
LIMS1-205ENST00000410093 TCTN2Q96GX1 697 aa12.69□□□□□ -0.38
LIMS1-205ENST00000410093 NLGN3Q9NZ94 848 aa12.69□□□□□ -0.38
LIMS1-205ENST00000410093 EPHA6Q9UF33 1036 aa12.69□□□□□ -0.38
LIMS1-205ENST00000410093 TMEM131Q92545 1883 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 CSF2P04141 144 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 RPLP0P05388 317 aaKnown RBP12.68□□□□□ -0.38
LIMS1-205ENST00000410093 NME1P15531 152 aaKnown RBP12.68□□□□□ -0.38
LIMS1-205ENST00000410093 POU1F1P28069 291 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 STAT5AP42229 794 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 C21orf59P57076 290 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 CDK5Q00535 292 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 BNIP3Q12983 259 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 FZD5Q13467 585 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 NR1D2Q14995 579 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 SPCS2Q15005 226 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 ZNF750Q32MQ0 723 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 MFSD4BQ5TF39 518 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 FRRS1Q6ZNA5 592 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 GDPGP1Q6ZNW5 385 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 RASSF6Q6ZTQ3 369 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 USP43Q70EL4 1123 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 ASCL5Q7RTU5 278 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 ARHGAP22Q7Z5H3 698 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 MRGPREQ86SM8 312 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 RBM45Q8IUH3 476 aaKnown RBP12.68□□□□□ -0.38
LIMS1-205ENST00000410093 LACC1Q8IV20 430 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 RNF113BQ8IZP6 322 aaKnown RBP12.68□□□□□ -0.38
LIMS1-205ENST00000410093 CARFQ8N187 725 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 ZNF687Q8N1G0 1237 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 CA13Q8N1Q1 262 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 ZNF619Q8N2I2 560 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 SPEM1Q8N4L4 309 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 CLDN22Q8N7P3 220 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 KBTBD8Q8NFY9 601 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 PIGXQ8TBF5 258 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 OIT3Q8WWZ8 545 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 ACOT11Q8WXI4 607 aaPredicted RBP12.68□□□□□ -0.38
LIMS1-205ENST00000410093 DIO2Q92813 273 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 HOXB13Q92826 284 aaPredicted RBP12.68□□□□□ -0.38
LIMS1-205ENST00000410093 KAT2AQ92830 837 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 OSTF1Q92882 214 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 SLC35B4Q969S0 331 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 PPP1R14BQ96C90 147 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 LGALS12Q96DT0 336 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 FCRL4Q96PJ5 515 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 ORAI3Q9BRQ5 295 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 YIPF4Q9BSR8 244 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 RSPO3Q9BXY4 272 aaPredicted RBP12.68□□□□□ -0.38
LIMS1-205ENST00000410093 ZNF350Q9GZX5 532 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 SIAEQ9HAT2 523 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 MAN2C1Q9NTJ4 1040 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 MED17Q9NVC6 651 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 C14orf105Q9NVL8 296 aa12.68□□□□□ -0.38
LIMS1-205ENST00000410093 ZNF443Q9Y2A4 671 aaPredicted RBP12.68□□□□□ -0.38
LIMS1-205ENST00000410093 GOLGA4Q13439 2230 aaKnown RBP12.68□□□□□ -0.38
LIMS1-205ENST00000410093 LOC105369274A0A096LPK9 316 aa12.67□□□□□ -0.38
LIMS1-205ENST00000410093 IGHV1OR15-9A0A0B4J2B8 117 aa12.67□□□□□ -0.38
LIMS1-205ENST00000410093 LOC102723532A0A0G2JNH3 316 aa12.67□□□□□ -0.38
LIMS1-205ENST00000410093 AGAP5A6NIR3 686 aa12.67□□□□□ -0.38
LIMS1-205ENST00000410093 METTL12A8MUP2 240 aa12.67□□□□□ -0.38
LIMS1-205ENST00000410093 EFCAB9A8MZ26 197 aa12.67□□□□□ -0.38
LIMS1-205ENST00000410093 EPPINO95925 133 aa12.67□□□□□ -0.38
LIMS1-205ENST00000410093 ALPPL2P10696 532 aa12.67□□□□□ -0.38
LIMS1-205ENST00000410093 RPS4Y1P22090 263 aaKnown RBP12.67□□□□□ -0.38
LIMS1-205ENST00000410093 MMP11P24347 488 aa12.67□□□□□ -0.38
LIMS1-205ENST00000410093 CD38P28907 300 aa12.67□□□□□ -0.38
LIMS1-205ENST00000410093 CSTF2P33240 577 aaKnown RBP eCLIP12.67□□□□□ -0.38
LIMS1-205ENST00000410093 STT3AP46977 705 aa12.67□□□□□ -0.38
LIMS1-205ENST00000410093 GIPRP48546 466 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms