RNA–Protein interactions for RNA: ENST00000406134.5

MSH2-202, Transcript of mutS homolog 2, humanhuman

TSL 1 (best) BASIC

Gene MSH2, Length 3,628 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-202ENST00000406134 MARCH7Q9H992 704 aa9.22□□□□□ -0.93
MSH2-202ENST00000406134 ISYNA1Q9NPH2 558 aa9.22□□□□□ -0.93
MSH2-202ENST00000406134 NTMQ9P121 344 aa9.22□□□□□ -0.93
MSH2-202ENST00000406134 CRNNQ9UBG3 495 aaPredicted RBP9.22□□□□□ -0.93
MSH2-202ENST00000406134 KCNK6Q9Y257 313 aa9.22□□□□□ -0.93
MSH2-202ENST00000406134 PDZK1P1A8MUH7 402 aa9.22□□□□□ -0.93
MSH2-202ENST00000406134 ASNA1O43681 348 aa9.22□□□□□ -0.93
MSH2-202ENST00000406134 ACADMP11310 421 aa9.22□□□□□ -0.93
MSH2-202ENST00000406134 KIR2DL3P43628 341 aa9.22□□□□□ -0.93
MSH2-202ENST00000406134 ZNF136P52737 540 aa9.22□□□□□ -0.93
MSH2-202ENST00000406134 MLLT1Q03111 559 aaPredicted RBP9.22□□□□□ -0.93
MSH2-202ENST00000406134 TSPAN31Q12999 210 aa9.22□□□□□ -0.93
MSH2-202ENST00000406134 C6orf183Q5T699 404 aa9.22□□□□□ -0.93
MSH2-202ENST00000406134 UTS2BQ765I0 119 aa9.22□□□□□ -0.93
MSH2-202ENST00000406134 SLC9A6Q92581 669 aa9.22□□□□□ -0.93
MSH2-202ENST00000406134 RAB7BQ96AH8 199 aa9.22□□□□□ -0.93
MSH2-202ENST00000406134 SLC35A4Q96G79 324 aa9.22□□□□□ -0.93
MSH2-202ENST00000406134 QRFPRQ96P65 431 aa9.22□□□□□ -0.93
MSH2-202ENST00000406134 PRSS27Q9BQR3 290 aa9.22□□□□□ -0.93
MSH2-202ENST00000406134 FNDC11Q9BVV2 318 aa9.22□□□□□ -0.93
MSH2-202ENST00000406134 RNF32Q9H0A6 362 aa9.22□□□□□ -0.93
MSH2-202ENST00000406134 ENKD1Q9H0I2 346 aa9.22□□□□□ -0.93
MSH2-202ENST00000406134 TPK1Q9H3S4 243 aa9.22□□□□□ -0.93
MSH2-202ENST00000406134 EXOSC4Q9NPD3 245 aaKnown RBP9.22□□□□□ -0.93
MSH2-202ENST00000406134 KLF15Q9UIH9 416 aa9.22□□□□□ -0.93
MSH2-202ENST00000406134 NDRG2Q9UN36 371 aaKnown RBP9.22□□□□□ -0.93
MSH2-202ENST00000406134 EXOGQ9Y2C4 368 aaKnown RBP9.22□□□□□ -0.93
MSH2-202ENST00000406134 SLC17A4Q9Y2C5 497 aa9.22□□□□□ -0.93
MSH2-202ENST00000406134 A0A0G2JPF8 293 aa9.21□□□□□ -0.93
MSH2-202ENST00000406134 A8MV72 311 aaPredicted RBP9.21□□□□□ -0.93
MSH2-202ENST00000406134 HNRNPCL2B2RXH8 293 aa9.21□□□□□ -0.93
MSH2-202ENST00000406134 HNRNPCL3B7ZW38 293 aa9.21□□□□□ -0.93
MSH2-202ENST00000406134 HNRNPCL4P0DMR1 293 aa9.21□□□□□ -0.93
MSH2-202ENST00000406134 CLDN2P57739 230 aa9.21□□□□□ -0.93
MSH2-202ENST00000406134 P2RY14Q15391 338 aa9.21□□□□□ -0.93
MSH2-202ENST00000406134 PRAMEF8Q5VWM4 474 aa9.21□□□□□ -0.93
MSH2-202ENST00000406134 PRAMEF7Q5VXH5 474 aa9.21□□□□□ -0.93
MSH2-202ENST00000406134 TMEM91Q6ZNR0 172 aa9.21□□□□□ -0.93
MSH2-202ENST00000406134 TRILQ7L0X0 811 aa9.21□□□□□ -0.93
MSH2-202ENST00000406134 SIRT6Q8N6T7 355 aa9.21□□□□□ -0.93
MSH2-202ENST00000406134 OR4F15Q8NGB8 312 aa9.21□□□□□ -0.93
MSH2-202ENST00000406134 OR9Q1Q8NGQ5 310 aa9.21□□□□□ -0.93
MSH2-202ENST00000406134 FGF13Q92913 245 aa9.21□□□□□ -0.93
MSH2-202ENST00000406134 KISS1RQ969F8 398 aaPredicted RBP9.21□□□□□ -0.93
MSH2-202ENST00000406134 SCARF2Q96GP6 870 aaPredicted RBP9.21□□□□□ -0.93
MSH2-202ENST00000406134 FERD3LQ96RJ6 166 aa9.21□□□□□ -0.93
MSH2-202ENST00000406134 ATF6BQ99941 703 aa9.21□□□□□ -0.93
MSH2-202ENST00000406134 PPIL3Q9H2H8 161 aaKnown RBP9.21□□□□□ -0.93
MSH2-202ENST00000406134 PRM3Q9NNZ6 103 aa9.21□□□□□ -0.93
MSH2-202ENST00000406134 TRPC4Q9UBN4 977 aa9.21□□□□□ -0.93
MSH2-202ENST00000406134 CBLCQ9ULV8 474 aa9.21□□□□□ -0.93
MSH2-202ENST00000406134 SNX7Q9UNH6 387 aa9.21□□□□□ -0.93
MSH2-202ENST00000406134 SPIN1Q9Y657 262 aaPredicted RBP9.21□□□□□ -0.93
MSH2-202ENST00000406134 SIRT4Q9Y6E7 314 aaPredicted RBP9.21□□□□□ -0.93
MSH2-202ENST00000406134 ARHGEF17Q96PE2 2063 aaPredicted RBP9.21□□□□□ -0.94
MSH2-202ENST00000406134 CPSF4LA6NMK7 179 aaKnown RBP9.21□□□□□ -0.94
MSH2-202ENST00000406134 ISM1B1AKI9 464 aa9.21□□□□□ -0.94
MSH2-202ENST00000406134 B4DXG7 233 aa9.21□□□□□ -0.94
MSH2-202ENST00000406134 SYT5O00445 386 aa9.21□□□□□ -0.94
MSH2-202ENST00000406134 POLR1CO15160 346 aaPredicted RBP9.21□□□□□ -0.94
MSH2-202ENST00000406134 ERI3O43414 337 aaKnown RBP9.21□□□□□ -0.94
MSH2-202ENST00000406134 RNGTTO60942 597 aaKnown RBP9.21□□□□□ -0.94
MSH2-202ENST00000406134 NCR1O76036 304 aa9.21□□□□□ -0.94
MSH2-202ENST00000406134 SLC35G4P0C7Q5 338 aa9.21□□□□□ -0.94
MSH2-202ENST00000406134 TFPIP10646 304 aa9.21□□□□□ -0.94
MSH2-202ENST00000406134 TEAD1P28347 426 aa9.21□□□□□ -0.94
MSH2-202ENST00000406134 IGFALSP35858 605 aa9.21□□□□□ -0.94
MSH2-202ENST00000406134 DDOSTP39656 456 aa9.21□□□□□ -0.94
MSH2-202ENST00000406134 PRKAG1P54619 331 aa9.21□□□□□ -0.94
MSH2-202ENST00000406134 NDUFA9Q16795 377 aa9.21□□□□□ -0.94
MSH2-202ENST00000406134 SLC35F1Q5T1Q4 408 aa9.21□□□□□ -0.94
MSH2-202ENST00000406134 TANGO2Q6ICL3 276 aa9.21□□□□□ -0.94
MSH2-202ENST00000406134 TMPRSS11AQ6ZMR5 421 aa9.21□□□□□ -0.94
MSH2-202ENST00000406134 RASSF6Q6ZTQ3 369 aa9.21□□□□□ -0.94
MSH2-202ENST00000406134 ANKK1Q8NFD2 765 aa9.21□□□□□ -0.94
MSH2-202ENST00000406134 OR7G2Q8NG99 324 aa9.21□□□□□ -0.94
MSH2-202ENST00000406134 TMEM255BQ8WV15 326 aa9.21□□□□□ -0.94
MSH2-202ENST00000406134 TRMT61BQ9BVS5 477 aaKnown RBP9.21□□□□□ -0.94
MSH2-202ENST00000406134 JAM3Q9BX67 310 aa9.21□□□□□ -0.94
MSH2-202ENST00000406134 IL20Q9NYY1 176 aa9.21□□□□□ -0.94
MSH2-202ENST00000406134 GAAP10253 952 aa9.2□□□□□ -0.94
MSH2-202ENST00000406134 GNSP15586 552 aa9.2□□□□□ -0.94
MSH2-202ENST00000406134 FUT1P19526 365 aa9.2□□□□□ -0.94
MSH2-202ENST00000406134 TBXA2RP21731 343 aa9.2□□□□□ -0.94
MSH2-202ENST00000406134 GABRA5P31644 462 aa9.2□□□□□ -0.94
MSH2-202ENST00000406134 GPC1P35052 558 aa9.2□□□□□ -0.94
MSH2-202ENST00000406134 BUD31P41223 144 aaPredicted RBP9.2□□□□□ -0.94
MSH2-202ENST00000406134 SLC1A3P43003 542 aa9.2□□□□□ -0.94
MSH2-202ENST00000406134 SMSP52788 366 aa9.2□□□□□ -0.94
MSH2-202ENST00000406134 COPZ1P61923 177 aa9.2□□□□□ -0.94
MSH2-202ENST00000406134 TMEM35AQ53FP2 167 aa9.2□□□□□ -0.94
MSH2-202ENST00000406134 SLC36A4Q6YBV0 504 aa9.2□□□□□ -0.94
MSH2-202ENST00000406134 PEX5LQ8IYB4 626 aa9.2□□□□□ -0.94
MSH2-202ENST00000406134 OR8H2Q8N162 312 aa9.2□□□□□ -0.94
MSH2-202ENST00000406134 OR2L5Q8NG80 312 aa9.2□□□□□ -0.94
MSH2-202ENST00000406134 TMCO6Q96DC7 493 aa9.2□□□□□ -0.94
MSH2-202ENST00000406134 PLSCR3Q9NRY6 295 aa9.2□□□□□ -0.94
MSH2-202ENST00000406134 KCMF1Q9P0J7 381 aa9.2□□□□□ -0.94
MSH2-202ENST00000406134 KCNE5Q9UJ90 142 aa9.2□□□□□ -0.94
MSH2-202ENST00000406134 ZNF223Q9UK11 482 aaPredicted RBP9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms