RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 ELL3Q9HB65 397 aaPredicted RBP8.53□□□□□ -1.04
LIG4-202ENST00000405925 UCKL1Q9NWZ5 548 aa8.53□□□□□ -1.04
LIG4-202ENST00000405925 KLF15Q9UIH9 416 aa8.53□□□□□ -1.04
LIG4-202ENST00000405925 SOCS2O14508 198 aa8.53□□□□□ -1.04
LIG4-202ENST00000405925 SPINT1O43278 529 aa8.53□□□□□ -1.04
LIG4-202ENST00000405925 RNF13O43567 381 aa8.53□□□□□ -1.04
LIG4-202ENST00000405925 RASAL1O95294 804 aa8.53□□□□□ -1.04
LIG4-202ENST00000405925 CD22P20273 847 aa8.53□□□□□ -1.04
LIG4-202ENST00000405925 GAB1Q13480 694 aa8.53□□□□□ -1.04
LIG4-202ENST00000405925 PON3Q15166 354 aa8.53□□□□□ -1.04
LIG4-202ENST00000405925 TMEM225Q6GV28 225 aa8.53□□□□□ -1.04
LIG4-202ENST00000405925 SLC35F3Q8IY50 421 aa8.53□□□□□ -1.04
LIG4-202ENST00000405925 ZNF440Q8IYI8 595 aa8.53□□□□□ -1.04
LIG4-202ENST00000405925 NLGN4XQ8N0W4 816 aa8.53□□□□□ -1.04
LIG4-202ENST00000405925 ANKRD53Q8N9V6 530 aa8.53□□□□□ -1.04
LIG4-202ENST00000405925 TOR1AIP2Q8NFQ8 470 aa8.53□□□□□ -1.04
LIG4-202ENST00000405925 OR9Q2Q8NGE9 314 aa8.53□□□□□ -1.04
LIG4-202ENST00000405925 GNPDA2Q8TDQ7 276 aa8.53□□□□□ -1.04
LIG4-202ENST00000405925 GPBAR1Q8TDU6 330 aa8.53□□□□□ -1.04
LIG4-202ENST00000405925 GAB3Q8WWW8 586 aa8.53□□□□□ -1.04
LIG4-202ENST00000405925 RDH12Q96NR8 316 aa8.53□□□□□ -1.04
LIG4-202ENST00000405925 NUDT22Q9BRQ3 303 aa8.53□□□□□ -1.04
LIG4-202ENST00000405925 LRRN3Q9H3W5 708 aa8.53□□□□□ -1.04
LIG4-202ENST00000405925 SERHL2Q9H4I8 314 aa8.53□□□□□ -1.04
LIG4-202ENST00000405925 TMEM9BQ9NQ34 198 aa8.53□□□□□ -1.04
LIG4-202ENST00000405925 SERHLQ9NQF3 203 aa8.53□□□□□ -1.04
LIG4-202ENST00000405925 NANSQ9NR45 359 aa8.53□□□□□ -1.04
LIG4-202ENST00000405925 CENPMQ9NSP4 180 aa8.53□□□□□ -1.04
LIG4-202ENST00000405925 IL20RAQ9UHF4 553 aa8.53□□□□□ -1.04
LIG4-202ENST00000405925 KRBA1A5PL33 1030 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 MITFO75030 526 aaPredicted RBP8.52□□□□□ -1.05
LIG4-202ENST00000405925 ZFAND5O76080 213 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 ACPPP15309 386 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 GM2AP17900 193 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 C16orf72Q14CZ0 275 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 OR5M10Q6IEU7 315 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 PAQR7Q86WK9 346 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 VRK2Q86Y07 508 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 SLC16A11Q8NCK7 471 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 ELP4Q96EB1 424 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 ERMAPQ96PL5 475 aaPredicted RBP8.52□□□□□ -1.05
LIG4-202ENST00000405925 KCNN2Q9H2S1 579 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 DDX31Q9H8H2 851 aaKnown RBP8.52□□□□□ -1.05
LIG4-202ENST00000405925 GORASP2Q9H8Y8 452 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 ARMC1Q9NVT9 282 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 CBLCQ9ULV8 474 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 VDAC3Q9Y277 283 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 SPTBP11277 2137 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 H3BNX3 289 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 CASKO14936 926 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 SEC14L5O43304 696 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 APOL3O95236 402 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 C8BP07358 591 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 CCDC159P0C7I6 412 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 SLC35E2P0CK97 266 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 GSTT1P30711 240 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 TIAL1Q01085 375 aaKnown RBP eCLIP8.52□□□□□ -1.05
LIG4-202ENST00000405925 NPRL3Q12980 569 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 VWA2Q5GFL6 755 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 PDZK1Q5T2W1 519 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 GUSBP11Q6P575 273 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 CBLL1Q75N03 491 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 CXXC5Q7LFL8 322 aaKnown RBP8.52□□□□□ -1.05
LIG4-202ENST00000405925 P4HA3Q7Z4N8 544 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 KBTBD2Q8IY47 623 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 ADGRF3Q8IZF5 1079 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 SGTBQ96EQ0 304 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 SLC41A3Q96GZ6 507 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 SENP5Q96HI0 755 aaPredicted RBP8.52□□□□□ -1.05
LIG4-202ENST00000405925 BTBD2Q9BX70 525 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 TNFRSF10DQ9UBN6 386 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 WDR81Q562E7 1941 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 WASHC1A8K0Z3 465 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 XPNPEP2O43895 674 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 GALR3O60755 368 aaPredicted RBP8.52□□□□□ -1.05
LIG4-202ENST00000405925 PPM1BO75688 479 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 NADKO95544 446 aaPredicted RBP8.52□□□□□ -1.05
LIG4-202ENST00000405925 HOXC4P09017 264 aaPredicted RBP8.52□□□□□ -1.05
LIG4-202ENST00000405925 TCN2P20062 427 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 BLMHQ13867 455 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 ZNF385BQ569K4 471 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 P2RY8Q86VZ1 359 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 ZNF433Q8N7K0 673 aaPredicted RBP8.52□□□□□ -1.05
LIG4-202ENST00000405925 DTWD2Q8NBA8 298 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 ZSCAN1Q8NBB4 408 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 FAM46AQ96IP4 442 aaKnown RBP8.52□□□□□ -1.05
LIG4-202ENST00000405925 OR1F2PQ96R84 312 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 SLC29A1Q99808 456 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 PINK1Q9BXM7 581 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 RACGAP1Q9H0H5 632 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 TMEM185BQ9H7F4 350 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 BRD7Q9NPI1 651 aa8.52□□□□□ -1.05
LIG4-202ENST00000405925 MAGED1Q9Y5V3 778 aaPredicted RBP8.52□□□□□ -1.05
LIG4-202ENST00000405925 IGHV3-20A0A0C4DH32 117 aa8.51□□□□□ -1.05
LIG4-202ENST00000405925 TCRBV3S1A0A5B6 114 aa8.51□□□□□ -1.05
LIG4-202ENST00000405925 BLACEA4D250 179 aa8.51□□□□□ -1.05
LIG4-202ENST00000405925 DPPA5A6NC42 116 aa8.51□□□□□ -1.05
LIG4-202ENST00000405925 VSTM2BA6NLU5 285 aa8.51□□□□□ -1.05
LIG4-202ENST00000405925 SLC30A4O14863 429 aa8.51□□□□□ -1.05
LIG4-202ENST00000405925 CASC3O15234 703 aaKnown RBP8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms