RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 TGM7Q96PF1 710 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 H7BY64 318 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 GNSP15586 552 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 EPHA1P21709 976 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 C21orf33P30042 268 aaPredicted RBP11.27□□□□□ -0.61
SYNPO-202ENST00000394243 PPT1P50897 306 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 PDSS1Q5T2R2 415 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 FCRLBQ6BAA4 426 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 PRSS55Q6UWB4 352 aaPredicted RBP11.27□□□□□ -0.61
SYNPO-202ENST00000394243 DPY19L4Q7Z388 723 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 PRAP1Q96NZ9 151 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 ACTL8Q9H568 366 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 SERTAD4Q9NUC0 356 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 ASB6Q9NWX5 421 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 GJD2Q9UKL4 321 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 RASD1Q9Y272 281 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 G3V2L1 256 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 SCAMP2O15127 329 aaKnown RBP11.27□□□□□ -0.61
SYNPO-202ENST00000394243 CSTAP01040 98 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 SERINC3Q13530 473 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 C18orf63Q68DL7 685 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 APOOLQ6UXV4 268 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 Q6ZNX1 250 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 TPRG1Q6ZUI0 275 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 NRROSQ86YC3 692 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 HERVK_113Q902F9 699 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 HOXB13Q92826 284 aaPredicted RBP11.27□□□□□ -0.61
SYNPO-202ENST00000394243 SLC25A18Q9H1K4 315 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 DZANK1Q9NVP4 752 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 TP53I3Q53FA7 332 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 TMEM41BQ5BJD5 291 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 LRIF1Q5T3J3 769 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 FBXO22Q8NEZ5 403 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 STEAP2Q8NFT2 490 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 SLC7A13Q8TCU3 470 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 BRIX1Q8TDN6 353 aaKnown RBP11.26□□□□□ -0.61
SYNPO-202ENST00000394243 TOMM40LQ969M1 308 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 SAMD8Q96LT4 415 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 BTBD2Q9BX70 525 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 UFSP2Q9NUQ7 469 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 NOX1Q9Y5S8 564 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 ENPP4Q9Y6X5 453 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 S1PR4O95977 384 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 SELPLGQ14242 412 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 C2orf76Q3KRA6 126 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 TMEM225Q6GV28 225 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.26□□□□□ -0.61
SYNPO-202ENST00000394243 OR51L1Q8NGJ5 315 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 TSPAN10Q9H1Z9 355 aaPredicted RBP11.26□□□□□ -0.61
SYNPO-202ENST00000394243 FBXL2Q9UKC9 423 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 HCRTO43612 131 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 GPR143P51810 404 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 ZNF41P51814 821 aaPredicted RBP11.26□□□□□ -0.61
SYNPO-202ENST00000394243 TAS2R31P59538 309 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 GALNT1Q10472 559 aaPredicted RBP11.26□□□□□ -0.61
SYNPO-202ENST00000394243 UGT3A2Q3SY77 523 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 CARD17Q5XLA6 110 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 LEG1Q6P5S2 330 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 ZNF695Q8IW36 515 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 ST6GALNAC5Q9BVH7 336 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 GRIN3BO60391 1043 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 FUCA1P04066 466 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 ADORA3P0DMS8 318 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 PKLRP30613 574 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 MMP12P39900 470 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 RRAS2P62070 204 aaPredicted RBP11.26□□□□□ -0.61
SYNPO-202ENST00000394243 AMZ1Q400G9 498 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 GTDC1Q4AE62 458 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 C14orf80Q86SX3 495 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 IL17RDQ8NFM7 739 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 MUL1Q969V5 352 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 LIPT1Q9Y234 373 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 ADAM18Q9Y3Q7 739 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 KDELR3O43731 214 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 CACNG3O60359 315 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 NCR1O76036 304 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 HRGP04196 525 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 DDCP20711 480 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 SGSHP51688 502 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 GALK2Q01415 458 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 ACY1Q03154 408 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 EIF2B1Q14232 305 aaKnown RBP11.26□□□□□ -0.61
SYNPO-202ENST00000394243 PLEKHS1Q5SXH7 462 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 TRAM1L1Q8N609 369 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 CLEC4DQ8WXI8 215 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 RPL3LQ92901 407 aaKnown RBP11.26□□□□□ -0.61
SYNPO-202ENST00000394243 HS6ST2Q96MM7 605 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 TESQ9UGI8 421 aaKnown RBP11.26□□□□□ -0.61
SYNPO-202ENST00000394243 TMEM98Q9Y2Y6 226 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 MYO5BQ9ULV0 1848 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 LMTK2Q8IWU2 1503 aa11.26□□□□□ -0.61
SYNPO-202ENST00000394243 TMEM88BA6NKF7 163 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 MAGEB4O15481 346 aaPredicted RBP11.25□□□□□ -0.61
SYNPO-202ENST00000394243 PEX14O75381 377 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 ITGAMP11215 1152 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 RSU1Q15404 277 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 STEAP4Q687X5 459 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 BRAT1Q6PJG6 821 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 IL20RBQ6UXL0 311 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 Q6ZVU0 165 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms