RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 GPR32P1Q8NGA4 272 aa24.9■■□□□ 1.58
MSX1-201ENST00000382723 OR4N2Q8NGD1 307 aa24.9■■□□□ 1.58
MSX1-201ENST00000382723 WDR36Q8NI36 951 aaKnown RBP24.9■■□□□ 1.58
MSX1-201ENST00000382723 BDH2Q9BUT1 245 aa24.9■■□□□ 1.58
MSX1-201ENST00000382723 SPATA5L1Q9BVQ7 753 aa24.9■■□□□ 1.58
MSX1-201ENST00000382723 NUDT9Q9BW91 350 aa24.9■■□□□ 1.58
MSX1-201ENST00000382723 BAG5Q9UL15 447 aa24.9■■□□□ 1.58
MSX1-201ENST00000382723 SYNDIG1LA6NDD5 238 aa24.89■■□□□ 1.58
MSX1-201ENST00000382723 GNGT2O14610 69 aa24.89■■□□□ 1.58
MSX1-201ENST00000382723 AMER2Q8N7J2 671 aa24.89■■□□□ 1.58
MSX1-201ENST00000382723 C7orf34Q96L11 122 aa24.89■■□□□ 1.58
MSX1-201ENST00000382723 ART5Q96L15 291 aa24.89■■□□□ 1.58
MSX1-201ENST00000382723 VCX3BQ9H321 246 aa24.89■■□□□ 1.58
MSX1-201ENST00000382723 NXT1Q9UKK6 140 aaKnown RBP24.89■■□□□ 1.58
MSX1-201ENST00000382723 DKK1O94907 266 aa24.88■■□□□ 1.57
MSX1-201ENST00000382723 ALPPP05187 535 aa24.88■■□□□ 1.57
MSX1-201ENST00000382723 FESP07332 822 aa24.88■■□□□ 1.57
MSX1-201ENST00000382723 KCNJ5P48544 419 aa24.88■■□□□ 1.57
MSX1-201ENST00000382723 TARDBPQ13148 414 aaKnown RBP eCLIP24.88■■□□□ 1.57
MSX1-201ENST00000382723 GPR68Q15743 365 aa24.88■■□□□ 1.57
MSX1-201ENST00000382723 TYW3Q6IPR3 259 aaKnown RBP24.88■■□□□ 1.57
MSX1-201ENST00000382723 C6orf15Q6UXA7 325 aaPredicted RBP24.88■■□□□ 1.57
MSX1-201ENST00000382723 ZNF517Q6ZMY9 492 aaPredicted RBP24.88■■□□□ 1.57
MSX1-201ENST00000382723 KBTBD2Q8IY47 623 aa24.88■■□□□ 1.57
MSX1-201ENST00000382723 RASSF5Q8WWW0 418 aa24.88■■□□□ 1.57
MSX1-201ENST00000382723 PROX1Q92786 737 aa24.88■■□□□ 1.57
MSX1-201ENST00000382723 FOXJ2Q9P0K8 574 aa24.88■■□□□ 1.57
MSX1-201ENST00000382723 DNAJB9Q9UBS3 223 aa24.88■■□□□ 1.57
MSX1-201ENST00000382723 COPS7AQ9UBW8 275 aa24.88■■□□□ 1.57
MSX1-201ENST00000382723 DSPPQ9NZW4 1301 aa24.88■■□□□ 1.57
MSX1-201ENST00000382723 STX11O75558 287 aa24.88■■□□□ 1.57
MSX1-201ENST00000382723 KCNK2O95069 426 aa24.88■■□□□ 1.57
MSX1-201ENST00000382723 CT45A8P0DMV1 189 aa24.88■■□□□ 1.57
MSX1-201ENST00000382723 CT45A9P0DMV2 189 aa24.88■■□□□ 1.57
MSX1-201ENST00000382723 NCF4Q15080 339 aa24.88■■□□□ 1.57
MSX1-201ENST00000382723 CT45A2Q5DJT8 189 aa24.88■■□□□ 1.57
MSX1-201ENST00000382723 TMEM164Q5U3C3 297 aa24.88■■□□□ 1.57
MSX1-201ENST00000382723 MARCH9Q86YJ5 346 aa24.88■■□□□ 1.57
MSX1-201ENST00000382723 GEMIN6Q8WXD5 167 aaKnown RBP24.88■■□□□ 1.57
MSX1-201ENST00000382723 SLC46A1Q96NT5 459 aa24.88■■□□□ 1.57
MSX1-201ENST00000382723 ZNF350Q9GZX5 532 aa24.88■■□□□ 1.57
MSX1-201ENST00000382723 NTN4Q9HB63 628 aa24.88■■□□□ 1.57
MSX1-201ENST00000382723 Q9N2J8 555 aa24.88■■□□□ 1.57
MSX1-201ENST00000382723 OAZ3Q9UMX2 235 aa24.88■■□□□ 1.57
MSX1-201ENST00000382723 PTRH2Q9Y3E5 179 aaKnown RBP24.88■■□□□ 1.57
MSX1-201ENST00000382723 DTNAQ9Y4J8 743 aa24.88■■□□□ 1.57
MSX1-201ENST00000382723 PRAMEF25A6NGN4 478 aa24.87■■□□□ 1.57
MSX1-201ENST00000382723 ZNF311Q5JNZ3 666 aa24.87■■□□□ 1.57
MSX1-201ENST00000382723 IZUMO2Q6UXV1 221 aa24.87■■□□□ 1.57
MSX1-201ENST00000382723 VRK2Q86Y07 508 aa24.87■■□□□ 1.57
MSX1-201ENST00000382723 OR1N1Q8NGS0 311 aa24.87■■□□□ 1.57
MSX1-201ENST00000382723 C8orf44Q96CB5 159 aa24.87■■□□□ 1.57
MSX1-201ENST00000382723 MTHFD2LQ9H903 347 aaPredicted RBP24.87■■□□□ 1.57
MSX1-201ENST00000382723 PADI1Q9ULC6 663 aa24.87■■□□□ 1.57
MSX1-201ENST00000382723 OR10H1Q9Y4A9 318 aa24.87■■□□□ 1.57
MSX1-201ENST00000382723 PCNX2A6NKB5 2137 aa24.87■■□□□ 1.57
MSX1-201ENST00000382723 SOX30O94993 753 aa24.86■■□□□ 1.57
MSX1-201ENST00000382723 AK1P00568 194 aa24.86■■□□□ 1.57
MSX1-201ENST00000382723 CCNYL3P0C7X3 344 aa24.86■■□□□ 1.57
MSX1-201ENST00000382723 TIPARPQ7Z3E1 657 aaKnown RBP24.86■■□□□ 1.57
MSX1-201ENST00000382723 MORN4Q8NDC4 146 aa24.86■■□□□ 1.57
MSX1-201ENST00000382723 GAL3ST4Q96RP7 486 aa24.86■■□□□ 1.57
MSX1-201ENST00000382723 COQ10BQ9H8M1 238 aa24.86■■□□□ 1.57
MSX1-201ENST00000382723 PADI2Q9Y2J8 665 aa24.86■■□□□ 1.57
MSX1-201ENST00000382723 BRINP1O60477 761 aa24.86■■□□□ 1.57
MSX1-201ENST00000382723 PABPC4LP0CB38 370 aaKnown RBP24.86■■□□□ 1.57
MSX1-201ENST00000382723 CSRP1P21291 193 aaKnown RBP24.86■■□□□ 1.57
MSX1-201ENST00000382723 YAP1P46937 504 aaKnown RBP24.86■■□□□ 1.57
MSX1-201ENST00000382723 IST1P53990 364 aa24.86■■□□□ 1.57
MSX1-201ENST00000382723 PPP1R8Q12972 351 aaKnown RBP24.86■■□□□ 1.57
MSX1-201ENST00000382723 PUM1Q14671 1186 aaKnown RBP eCLIP24.86■■□□□ 1.57
MSX1-201ENST00000382723 COMTD1Q86VU5 262 aa24.86■■□□□ 1.57
MSX1-201ENST00000382723 GALNT4Q8N4A0 578 aa24.86■■□□□ 1.57
MSX1-201ENST00000382723 OR52P1PQ8NH57 321 aa24.86■■□□□ 1.57
MSX1-201ENST00000382723 TMBIM1Q969X1 311 aa24.86■■□□□ 1.57
MSX1-201ENST00000382723 ZNF354BQ96LW1 612 aa24.86■■□□□ 1.57
MSX1-201ENST00000382723 CFL2Q9Y281 166 aa24.86■■□□□ 1.57
MSX1-201ENST00000382723 PCDHGA3Q9Y5H0 932 aa24.86■■□□□ 1.57
MSX1-201ENST00000382723 NPIPA5A0A0B4J1W7 369 aa24.85■■□□□ 1.57
MSX1-201ENST00000382723 NPIPA7E9PJI5 369 aa24.85■■□□□ 1.57
MSX1-201ENST00000382723 PDLIM1O00151 329 aa24.85■■□□□ 1.57
MSX1-201ENST00000382723 DLGAP3O95886 979 aa24.85■■□□□ 1.57
MSX1-201ENST00000382723 CAPNS1P04632 268 aa24.85■■□□□ 1.57
MSX1-201ENST00000382723 NPIPA8P0DM63 369 aa24.85■■□□□ 1.57
MSX1-201ENST00000382723 ZNF23P17027 643 aa24.85■■□□□ 1.57
MSX1-201ENST00000382723 TRHRP34981 398 aaPredicted RBP24.85■■□□□ 1.57
MSX1-201ENST00000382723 IQCCQ4KMZ1 466 aa24.85■■□□□ 1.57
MSX1-201ENST00000382723 PIWIL3Q7Z3Z3 882 aaKnown RBP24.85■■□□□ 1.57
MSX1-201ENST00000382723 CPEB2Q7Z5Q1 589 aaKnown RBP24.85■■□□□ 1.57
MSX1-201ENST00000382723 TSEN54Q7Z6J9 526 aaKnown RBP24.85■■□□□ 1.57
MSX1-201ENST00000382723 ZAR1Q86SH2 424 aa24.85■■□□□ 1.57
MSX1-201ENST00000382723 EPHX4Q8IUS5 362 aa24.85■■□□□ 1.57
MSX1-201ENST00000382723 ZNF619Q8N2I2 560 aa24.85■■□□□ 1.57
MSX1-201ENST00000382723 VANGL1Q8TAA9 524 aaPredicted RBP24.85■■□□□ 1.57
MSX1-201ENST00000382723 NDUFAF4Q9P032 175 aa24.85■■□□□ 1.57
MSX1-201ENST00000382723 GPR55Q9Y2T6 319 aaPredicted RBP24.85■■□□□ 1.57
MSX1-201ENST00000382723 ZNF292O60281 2723 aa24.84■■□□□ 1.57
MSX1-201ENST00000382723 PEX1O43933 1283 aa24.84■■□□□ 1.57
MSX1-201ENST00000382723 KLF7O75840 302 aaPredicted RBP24.84■■□□□ 1.57
MSX1-201ENST00000382723 SEC24DO94855 1032 aaPredicted RBP24.84■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms