RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 URB1O60287 2271 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 PDE4DIPQ5VU43 2346 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 FAM72CH0Y354 149 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 ADAMDEC1O15204 470 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 LRP3O75074 770 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 ANGPTL1O95841 491 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 UQCRC2P22695 453 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 FAUP35544 74 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 RGRP47804 291 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 CSNK1DP48730 415 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 TXNL4AP83876 142 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 CRB2Q5IJ48 1285 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 FAM72AQ5TYM5 149 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 FAM72DQ6L9T8 149 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 ZYG11AQ6WRX3 759 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 FAM72BQ86X60 149 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 OR4F6Q8NGB9 312 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 NFKBIDQ8NI38 313 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 TNFRSF25Q93038 417 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 PDP1Q9P0J1 537 aaPredicted RBP8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 PFDN2Q9UHV9 154 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 MAGEL2Q9UJ55 1249 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 HS3ST2Q9Y278 367 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 ZNF175Q9Y473 711 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 A0A1B0GTQ1 180 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 C5orf67F2Z3F1 127 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 L7N2F9 121 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 PNMTP11086 282 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 CALB2P22676 271 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 SCTRP47872 440 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 VAMP2P63027 116 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 RSU1Q15404 277 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 ALG10BQ5I7T1 473 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 ULK3Q6PHR2 472 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 TMEM17Q86X19 198 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 SGTBQ96EQ0 304 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 PIK3IP1Q96FE7 263 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 MS4A7Q9GZW8 240 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 DAPK2Q9UIK4 370 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 MICAL3Q7RTP6 2002 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 ENO4A6NNW6 628 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 SLC1A7O00341 560 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 WNT7AO00755 349 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 LSM1O15116 133 aaKnown RBP8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 IFNGR1P15260 489 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 NXPH1P58417 271 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 LRRC15Q8TF66 581 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 TMEM41AQ96HV5 264 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 C9orf16Q9BUW7 83 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 LIPT1Q9Y234 373 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 HSPB2A8KAH6 182 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 D6RAR5 112 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 NME1P15531 152 aaKnown RBP8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 EIF1P41567 113 aaKnown RBP8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 CAPZBP47756 277 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 CLDN17P56750 224 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 SOX8P57073 446 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 CRYZQ08257 329 aaKnown RBP8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 TRAF3Q13114 568 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 HSPB2Q16082 182 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 NDUFAF5Q5TEU4 345 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 MZT2BQ6NZ67 158 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 CCNI2Q6ZMN8 369 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 HIPK1Q86Z02 1210 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 FAM185AQ8N0U4 392 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 ZNF570Q96NI8 536 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 KATNB1Q9BVA0 655 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 ZBTB26Q9HCK0 441 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 ST14Q9Y5Y6 855 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 U3KQV3 271 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 A0A1W2PPM1 405 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 TRBC2A0A5B9 178 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 LOC110117498-PIK3R3F6TDL0 507 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 OR2T1O43869 369 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 TMIGD3P0DMS9 266 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 BCKDHAP12694 445 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 FMO3P31513 532 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 ERVK-16P61578 105 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 ARHGAP19Q14CB8 494 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 ZNF750Q32MQ0 723 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 SPANXN2Q5MJ10 180 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 FAM199XQ6PEV8 388 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 THSD4Q6ZMP0 1018 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 LRRC18Q8N456 261 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 PIK3R3Q92569 461 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 UBL7Q96S82 380 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 DERL2Q9GZP9 239 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 DMAC2Q9NW81 257 aa8.66□□□□□ -1.02
LIMCH1-202ENST00000381753 SPTY2D1-AS1A0A0U1RR47 76 aa8.65□□□□□ -1.02
LIMCH1-202ENST00000381753 NUDT21O43809 227 aaKnown RBP8.65□□□□□ -1.02
LIMCH1-202ENST00000381753 VNN2O95498 520 aa8.65□□□□□ -1.02
LIMCH1-202ENST00000381753 PTPN4P29074 926 aa8.65□□□□□ -1.02
LIMCH1-202ENST00000381753 OPRD1P41143 372 aa8.65□□□□□ -1.02
LIMCH1-202ENST00000381753 HTR5AP47898 357 aa8.65□□□□□ -1.02
LIMCH1-202ENST00000381753 DUSP2Q05923 314 aa8.65□□□□□ -1.02
LIMCH1-202ENST00000381753 SLC5A12Q1EHB4 618 aa8.65□□□□□ -1.02
LIMCH1-202ENST00000381753 SWT1Q5T5J6 900 aaKnown RBP8.65□□□□□ -1.02
LIMCH1-202ENST00000381753 PM20D1Q6GTS8 502 aa8.65□□□□□ -1.02
LIMCH1-202ENST00000381753 TMEM92Q6UXU6 159 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 137.1 ms