RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 ZNF649Q9BS31 505 aa15.38■□□□□ 0.05
SDC4-201ENST00000372733 PAK6Q9NQU5 681 aaPredicted RBP15.38■□□□□ 0.05
SDC4-201ENST00000372733 LIPT1Q9Y234 373 aa15.38■□□□□ 0.05
SDC4-201ENST00000372733 TCF20Q9UGU0 1960 aaKnown RBP15.37■□□□□ 0.05
SDC4-201ENST00000372733 NOS1APO75052 506 aaPredicted RBP15.37■□□□□ 0.05
SDC4-201ENST00000372733 PAPLNO95428 1278 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 GPR4P46093 362 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 RAB8AP61006 207 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 SP3Q02447 781 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 DSG2Q14126 1118 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 NDUFAF5Q5TEU4 345 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 AADACL4Q5VUY2 407 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 CCDC28AQ8IWP9 274 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 OR2L2Q8NH16 312 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 DNAJA4Q8WW22 397 aaPredicted RBP15.37■□□□□ 0.05
SDC4-201ENST00000372733 C16orf58Q96GQ5 468 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 ART5Q96L15 291 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 C17orf62Q9BQA9 187 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 DPEP2Q9H4A9 486 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 SOCS6O14544 535 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 OR1F1O43749 312 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 CXCL10P02778 98 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 TFPIP10646 304 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 PTBP1P26599 531 aaKnown RBP eCLIP15.37■□□□□ 0.05
SDC4-201ENST00000372733 REEP5Q00765 189 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 FCN2Q15485 313 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 PIP5KL1Q5T9C9 394 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 BCL2L15Q5TBC7 163 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 RASSF6Q6ZTQ3 369 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 AMIGO1Q86WK6 493 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 VRK2Q86Y07 508 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 DCUN1D3Q8IWE4 304 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 TIGD4Q8IY51 512 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 RGMAQ96B86 450 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 CREB3L1Q96BA8 519 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 PHF21AQ96BD5 680 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 BTBD1Q9H0C5 482 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 BCL2L10Q9HD36 194 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 ADAM30Q9UKF2 790 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 ZFR2Q9UPR6 939 aaKnown RBP15.37■□□□□ 0.05
SDC4-201ENST00000372733 CSNK1G3Q9Y6M4 447 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 LRRK1Q38SD2 2015 aa15.37■□□□□ 0.05
SDC4-201ENST00000372733 A0A1W2PS29 197 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 SURF4O15260 269 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 ERAL1O75616 437 aaKnown RBP15.36■□□□□ 0.05
SDC4-201ENST00000372733 HMGN2P05204 90 aaKnown RBP15.36■□□□□ 0.05
SDC4-201ENST00000372733 POU3F3P20264 500 aaPredicted RBP15.36■□□□□ 0.05
SDC4-201ENST00000372733 ATP6V1E1P36543 226 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 SSR2P43308 183 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 CCR8P51685 355 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 DUSP2Q05923 314 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 TEAD2Q15562 447 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 ANKRD54Q6NXT1 300 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 ZNF793Q6ZN11 406 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 SIRT6Q8N6T7 355 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 TFGQ92734 400 aaPredicted RBP15.36■□□□□ 0.05
SDC4-201ENST00000372733 ZG16BQ96DA0 208 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 SPATA5L1Q9BVQ7 753 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 ISG20L2Q9H9L3 353 aaKnown RBP15.36■□□□□ 0.05
SDC4-201ENST00000372733 PELI2Q9HAT8 420 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 POLHQ9Y253 713 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 A0A0A6YYJ9 748 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 FABP7O15540 132 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 PIP5K1CO60331 668 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 FGBP02675 491 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 C6P13671 934 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 OMPP47874 163 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 FZD5Q13467 585 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 ADCK2Q7Z695 626 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 OR8H1Q8NGG4 311 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 CD99L2Q8TCZ2 262 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 TTC9Q92623 222 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 DIO2Q92813 273 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 RFKQ969G6 155 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 BBS4Q96RK4 519 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 COQ7Q99807 217 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 MACROD1Q9BQ69 325 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 TRAF4Q9BUZ4 470 aaPredicted RBP15.36■□□□□ 0.05
SDC4-201ENST00000372733 AICDAQ9GZX7 198 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 DDX31Q9H8H2 851 aaKnown RBP15.36■□□□□ 0.05
SDC4-201ENST00000372733 EQTNQ9NQ60 294 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 SLC35C2Q9NQQ7 365 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 SLC23A2Q9UGH3 650 aa15.36■□□□□ 0.05
SDC4-201ENST00000372733 FAM183AA6NL82 134 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 LCMT2O60294 686 aaKnown RBP15.35■□□□□ 0.05
SDC4-201ENST00000372733 SLC19A2O60779 497 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 SLC6A1P30531 599 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 PKLRP30613 574 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 IFNA8P32881 189 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 TRHRP34981 398 aaPredicted RBP15.35■□□□□ 0.05
SDC4-201ENST00000372733 TRAM2Q15035 370 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 ZNF322Q6U7Q0 402 aaPredicted RBP15.35■□□□□ 0.05
SDC4-201ENST00000372733 NKAIN4Q8IVV8 208 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 PIGXQ8TBF5 258 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 ZFPM2Q8WW38 1151 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 CLIP3Q96DZ5 547 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 CHFRQ96EP1 664 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 MAP6Q96JE9 813 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 LINC00615Q96LM1 132 aaPredicted RBP15.35■□□□□ 0.05
SDC4-201ENST00000372733 PINK1Q9BXM7 581 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms