RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 PRTGQ2VWP7 1150 aa12.33□□□□□ -0.44
SQSTM1-201ENST00000360718 GCNT6Q5T4J0 391 aa12.33□□□□□ -0.44
SQSTM1-201ENST00000360718 SLC48A1Q6P1K1 146 aa12.33□□□□□ -0.44
SQSTM1-201ENST00000360718 ZNF574Q6ZN55 896 aaPredicted RBP12.33□□□□□ -0.44
SQSTM1-201ENST00000360718 SAMD14Q8IZD0 417 aaPredicted RBP12.33□□□□□ -0.44
SQSTM1-201ENST00000360718 CRELD1Q96HD1 420 aa12.33□□□□□ -0.44
SQSTM1-201ENST00000360718 SLAMF7Q9NQ25 335 aa12.33□□□□□ -0.44
SQSTM1-201ENST00000360718 NDUFAF4Q9P032 175 aa12.33□□□□□ -0.44
SQSTM1-201ENST00000360718 CLCA2Q9UQC9 943 aa12.33□□□□□ -0.44
SQSTM1-201ENST00000360718 A8MU76 341 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 PGRMC2O15173 223 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 RPLP0P05388 317 aaKnown RBP12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 UQCRC2P22695 453 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 MPIP34949 423 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 GPC1P35052 558 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 FRKP42685 505 aaPredicted RBP12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 TMED10P49755 219 aaKnown RBP12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 NUBP1P53384 320 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 IFITM3Q01628 133 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 GAB1Q13480 694 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 RUNX2Q13950 521 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 MLC1Q15049 377 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 MICAQ29983 383 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 INAVAQ3KP66 663 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 SPDYE7PQ495Y7 208 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 GARNL3Q5VVW2 1013 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 PRR23CQ6ZRP0 262 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 PRSS42Q7Z5A4 293 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 KBTBD8Q8NFY9 601 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 OR52N2Q8NGI0 321 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 RPL3LQ92901 407 aaKnown RBP12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 COL21A1Q96P44 957 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 SP140LQ9H930 580 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 PRDM9Q9NQV7 894 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 RXFP3Q9NSD7 469 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 KCMF1Q9P0J7 381 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 UGT2A1Q9Y4X1 527 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 A0A1W2PS29 197 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 HYKKA2RU49 373 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 PRR33A8MZF0 331 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 TOX3O15405 576 aaPredicted RBP12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 CSNK2A2P19784 350 aaPredicted RBP12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 NCBP2P52298 156 aaKnown RBP eCLIP12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 CCL7P80098 99 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 SPIBQ01892 262 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 GRM7Q14831 915 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 SYT16Q17RD7 645 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 ZNF181Q2M3W8 571 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 TMEM71Q6P5X7 295 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 CCDC80Q76M96 950 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 STX19Q8N4C7 294 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 SLC5A8Q8N695 610 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 OR5T3Q8NGG3 340 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 C9orf43Q8TAL5 461 aaPredicted RBP12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 GGHQ92820 318 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 MAL2Q969L2 176 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 ZNF285Q96NJ3 590 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 DPYSL5Q9BPU6 564 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 ALOXE3Q9BYJ1 711 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 TMEM38AQ9H6F2 299 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 CPNE5Q9HCH3 593 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 THSD1Q9NS62 852 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 SEMA3GQ9NS98 782 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 FKBP14Q9NWM8 211 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 RAPGEFL1Q9UHV5 662 aa12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 FAM32AQ9Y421 112 aaKnown RBP12.32□□□□□ -0.44
SQSTM1-201ENST00000360718 METTL15A6NJ78 407 aa12.31□□□□□ -0.44
SQSTM1-201ENST00000360718 S100A5P33763 92 aa12.31□□□□□ -0.44
SQSTM1-201ENST00000360718 LIPAP38571 399 aa12.31□□□□□ -0.44
SQSTM1-201ENST00000360718 CRYBA2P53672 197 aa12.31□□□□□ -0.44
SQSTM1-201ENST00000360718 CDC20Q12834 499 aa12.31□□□□□ -0.44
SQSTM1-201ENST00000360718 SQSTM1Q13501 440 aa12.31□□□□□ -0.44
SQSTM1-201ENST00000360718 SCARB2Q14108 478 aa12.31□□□□□ -0.44
SQSTM1-201ENST00000360718 FAM53BQ14153 422 aa12.31□□□□□ -0.44
SQSTM1-201ENST00000360718 SF3A2Q15428 464 aaKnown RBP12.31□□□□□ -0.44
SQSTM1-201ENST00000360718 SLC46A3Q7Z3Q1 461 aa12.31□□□□□ -0.44
SQSTM1-201ENST00000360718 SLC22A16Q86VW1 577 aa12.31□□□□□ -0.44
SQSTM1-201ENST00000360718 ARMC8Q8IUR7 673 aa12.31□□□□□ -0.44
SQSTM1-201ENST00000360718 SLC30A8Q8IWU4 369 aa12.31□□□□□ -0.44
SQSTM1-201ENST00000360718 PSMA8Q8TAA3 256 aa12.31□□□□□ -0.44
SQSTM1-201ENST00000360718 AMDHD1Q96NU7 426 aa12.31□□□□□ -0.44
SQSTM1-201ENST00000360718 BTBD2Q9BX70 525 aa12.31□□□□□ -0.44
SQSTM1-201ENST00000360718 COL25A1Q9BXS0 654 aaPredicted RBP12.31□□□□□ -0.44
SQSTM1-201ENST00000360718 SYNDIG1Q9H7V2 258 aa12.31□□□□□ -0.44
SQSTM1-201ENST00000360718 IMPAD1Q9NX62 359 aa12.31□□□□□ -0.44
SQSTM1-201ENST00000360718 SEMA5BQ9P283 1151 aa12.31□□□□□ -0.44
SQSTM1-201ENST00000360718 ZNF229Q9UJW7 825 aa12.31□□□□□ -0.44
SQSTM1-201ENST00000360718 CES1P1Q9UKY3 287 aa12.31□□□□□ -0.44
SQSTM1-201ENST00000360718 CCDC88CQ9P219 2028 aa12.31□□□□□ -0.44
SQSTM1-201ENST00000360718 H3BMH7 237 aa12.31□□□□□ -0.44
SQSTM1-201ENST00000360718 SGK494L7N484 410 aa12.31□□□□□ -0.44
SQSTM1-201ENST00000360718 MPZL2O60487 215 aa12.31□□□□□ -0.44
SQSTM1-201ENST00000360718 TNFRSF21O75509 655 aa12.31□□□□□ -0.44
SQSTM1-201ENST00000360718 GCM2O75603 506 aaPredicted RBP12.31□□□□□ -0.44
SQSTM1-201ENST00000360718 UPK1BO75841 260 aa12.31□□□□□ -0.44
SQSTM1-201ENST00000360718 OR2B3O76000 313 aa12.31□□□□□ -0.44
SQSTM1-201ENST00000360718 ZNF883P0CG24 379 aa12.31□□□□□ -0.44
SQSTM1-201ENST00000360718 CKMT1AP12532 417 aa12.31□□□□□ -0.44
SQSTM1-201ENST00000360718 AVPR1BP47901 424 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms