RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 PPM1BO75688 479 aa20.39■□□□□ 0.86
SHMT1-203ENST00000354098 SLC25A12O75746 678 aa20.39■□□□□ 0.86
SHMT1-203ENST00000354098 DCTN3O75935 186 aa20.39■□□□□ 0.86
SHMT1-203ENST00000354098 UNC5CO95185 931 aa20.39■□□□□ 0.86
SHMT1-203ENST00000354098 IGKV1D-16P01601 117 aa20.39■□□□□ 0.86
SHMT1-203ENST00000354098 PIGAP37287 484 aa20.39■□□□□ 0.86
SHMT1-203ENST00000354098 MVDP53602 400 aa20.39■□□□□ 0.86
SHMT1-203ENST00000354098 NTRK2Q16620 822 aa20.39■□□□□ 0.86
SHMT1-203ENST00000354098 PLEKHN1Q494U1 663 aaPredicted RBP20.39■□□□□ 0.86
SHMT1-203ENST00000354098 MMEL1Q495T6 779 aa20.39■□□□□ 0.86
SHMT1-203ENST00000354098 DDX59Q5T1V6 619 aaKnown RBP eCLIP20.39■□□□□ 0.86
SHMT1-203ENST00000354098 SLC6A19Q695T7 634 aa20.39■□□□□ 0.86
SHMT1-203ENST00000354098 DHDDSQ86SQ9 333 aa20.39■□□□□ 0.86
SHMT1-203ENST00000354098 GPALPP1Q8IXQ4 340 aa20.39■□□□□ 0.86
SHMT1-203ENST00000354098 HORMAD2Q8N7B1 307 aa20.39■□□□□ 0.86
SHMT1-203ENST00000354098 COX18Q8N8Q8 333 aa20.39■□□□□ 0.86
SHMT1-203ENST00000354098 FAM13CQ8NE31 585 aa20.39■□□□□ 0.86
SHMT1-203ENST00000354098 MIPOL1Q8TD10 442 aa20.39■□□□□ 0.86
SHMT1-203ENST00000354098 RAB8BQ92930 207 aa20.39■□□□□ 0.86
SHMT1-203ENST00000354098 ADOQ96SZ5 270 aa20.39■□□□□ 0.86
SHMT1-203ENST00000354098 STACQ99469 402 aa20.39■□□□□ 0.86
SHMT1-203ENST00000354098 KLHL1Q9NR64 748 aa20.39■□□□□ 0.86
SHMT1-203ENST00000354098 DUSP22Q9NRW4 184 aa20.39■□□□□ 0.86
SHMT1-203ENST00000354098 B3GNT3Q9Y2A9 372 aa20.39■□□□□ 0.86
SHMT1-203ENST00000354098 CLIC1O00299 241 aa20.38■□□□□ 0.85
SHMT1-203ENST00000354098 TSPAN2O60636 221 aa20.38■□□□□ 0.85
SHMT1-203ENST00000354098 UGT2B11O75310 529 aa20.38■□□□□ 0.85
SHMT1-203ENST00000354098 OR12D1P0DN82 309 aa20.38■□□□□ 0.85
SHMT1-203ENST00000354098 RFX3P48380 749 aa20.38■□□□□ 0.85
SHMT1-203ENST00000354098 MRPS22P82650 360 aaKnown RBP20.38■□□□□ 0.85
SHMT1-203ENST00000354098 NFYCQ13952 458 aa20.38■□□□□ 0.85
SHMT1-203ENST00000354098 CCNJQ5T5M9 372 aa20.38■□□□□ 0.85
SHMT1-203ENST00000354098 FIGNL1Q6PIW4 674 aa20.38■□□□□ 0.85
SHMT1-203ENST00000354098 TRIM8Q9BZR9 551 aa20.38■□□□□ 0.85
SHMT1-203ENST00000354098 FBXO34Q9NWN3 711 aa20.38■□□□□ 0.85
SHMT1-203ENST00000354098 GIN1Q9NXP7 522 aa20.38■□□□□ 0.85
SHMT1-203ENST00000354098 TLN1Q9Y490 2541 aaKnown RBP20.38■□□□□ 0.85
SHMT1-203ENST00000354098 MRASO14807 208 aa20.38■□□□□ 0.85
SHMT1-203ENST00000354098 KCNK2O95069 426 aa20.38■□□□□ 0.85
SHMT1-203ENST00000354098 KRT75O95678 551 aa20.38■□□□□ 0.85
SHMT1-203ENST00000354098 SP1P08047 785 aa20.38■□□□□ 0.85
SHMT1-203ENST00000354098 KRT16P08779 473 aa20.38■□□□□ 0.85
SHMT1-203ENST00000354098 NAGAP17050 411 aa20.38■□□□□ 0.85
SHMT1-203ENST00000354098 STX5Q13190 355 aa20.38■□□□□ 0.85
SHMT1-203ENST00000354098 ZNF169Q14929 603 aaPredicted RBP20.38■□□□□ 0.85
SHMT1-203ENST00000354098 DECR1Q16698 335 aa20.38■□□□□ 0.85
SHMT1-203ENST00000354098 ZNF766Q5HY98 468 aa20.38■□□□□ 0.85
SHMT1-203ENST00000354098 RTL4Q6ZR62 310 aa20.38■□□□□ 0.85
SHMT1-203ENST00000354098 MTERF4Q7Z6M4 381 aaKnown RBP20.38■□□□□ 0.85
SHMT1-203ENST00000354098 FITM2Q8N6M3 262 aa20.38■□□□□ 0.85
SHMT1-203ENST00000354098 TEX19Q8NA77 164 aa20.38■□□□□ 0.85
SHMT1-203ENST00000354098 SLC39A7Q92504 469 aa20.38■□□□□ 0.85
SHMT1-203ENST00000354098 RCN3Q96D15 328 aa20.38■□□□□ 0.85
SHMT1-203ENST00000354098 SGCZQ96LD1 299 aa20.38■□□□□ 0.85
SHMT1-203ENST00000354098 IKZF5Q9H5V7 419 aa20.38■□□□□ 0.85
SHMT1-203ENST00000354098 SH2D2AQ9NP31 389 aa20.38■□□□□ 0.85
SHMT1-203ENST00000354098 CHCHD2Q9Y6H1 151 aaPredicted RBP20.38■□□□□ 0.85
SHMT1-203ENST00000354098 TRAV17A0A0B4J275 112 aa20.37■□□□□ 0.85
SHMT1-203ENST00000354098 BBIP1A8MTZ0 92 aa20.37■□□□□ 0.85
SHMT1-203ENST00000354098 CCL3P10147 92 aa20.37■□□□□ 0.85
SHMT1-203ENST00000354098 TMED10P49755 219 aaKnown RBP20.37■□□□□ 0.85
SHMT1-203ENST00000354098 CAPRIN1Q14444 709 aaKnown RBP20.37■□□□□ 0.85
SHMT1-203ENST00000354098 COQ5Q5HYK3 327 aa20.37■□□□□ 0.85
SHMT1-203ENST00000354098 SLC25A25Q6KCM7 469 aa20.37■□□□□ 0.85
SHMT1-203ENST00000354098 LSM14AQ8ND56 463 aaKnown RBP20.37■□□□□ 0.85
SHMT1-203ENST00000354098 PSD4Q8NDX1 1056 aa20.37■□□□□ 0.85
SHMT1-203ENST00000354098 FAM110BQ8TC76 370 aa20.37■□□□□ 0.85
SHMT1-203ENST00000354098 XAGE5Q8WWM1 108 aa20.37■□□□□ 0.85
SHMT1-203ENST00000354098 DIO2Q92813 273 aa20.37■□□□□ 0.85
SHMT1-203ENST00000354098 HGDQ93099 445 aa20.37■□□□□ 0.85
SHMT1-203ENST00000354098 SLC39A3Q9BRY0 314 aa20.37■□□□□ 0.85
SHMT1-203ENST00000354098 BTBD2Q9BX70 525 aa20.37■□□□□ 0.85
SHMT1-203ENST00000354098 NIPSNAP3AQ9UFN0 247 aaPredicted RBP20.37■□□□□ 0.85
SHMT1-203ENST00000354098 SPENQ96T58 3664 aaKnown RBP20.37■□□□□ 0.85
SHMT1-203ENST00000354098 OR6C70A6NIJ9 312 aa20.36■□□□□ 0.85
SHMT1-203ENST00000354098 DUXAA6NLW8 204 aa20.36■□□□□ 0.85
SHMT1-203ENST00000354098 HMGN4O00479 90 aa20.36■□□□□ 0.85
SHMT1-203ENST00000354098 ETFAP13804 333 aa20.36■□□□□ 0.85
SHMT1-203ENST00000354098 CD46P15529 392 aa20.36■□□□□ 0.85
SHMT1-203ENST00000354098 IL12BP29460 328 aa20.36■□□□□ 0.85
SHMT1-203ENST00000354098 KRT20P35900 424 aa20.36■□□□□ 0.85
SHMT1-203ENST00000354098 PSPHP78330 225 aa20.36■□□□□ 0.85
SHMT1-203ENST00000354098 POU6F2P78424 691 aaPredicted RBP20.36■□□□□ 0.85
SHMT1-203ENST00000354098 NFATC3Q12968 1075 aa20.36■□□□□ 0.85
SHMT1-203ENST00000354098 RUNDC3AQ59EK9 446 aa20.36■□□□□ 0.85
SHMT1-203ENST00000354098 ZAR1Q86SH2 424 aa20.36■□□□□ 0.85
SHMT1-203ENST00000354098 DND1Q8IYX4 353 aaKnown RBP20.36■□□□□ 0.85
SHMT1-203ENST00000354098 Q8NA96 180 aa20.36■□□□□ 0.85
SHMT1-203ENST00000354098 GOLM1Q8NBJ4 401 aa20.36■□□□□ 0.85
SHMT1-203ENST00000354098 DNAJB8Q8NHS0 232 aa20.36■□□□□ 0.85
SHMT1-203ENST00000354098 PAQR8Q8TEZ7 354 aa20.36■□□□□ 0.85
SHMT1-203ENST00000354098 PNPLA2Q96AD5 504 aa20.36■□□□□ 0.85
SHMT1-203ENST00000354098 TMEM125Q96AQ2 219 aa20.36■□□□□ 0.85
SHMT1-203ENST00000354098 SCMH1Q96GD3 660 aa20.36■□□□□ 0.85
SHMT1-203ENST00000354098 C5orf34Q96MH7 638 aa20.36■□□□□ 0.85
SHMT1-203ENST00000354098 COL21A1Q96P44 957 aa20.36■□□□□ 0.85
SHMT1-203ENST00000354098 NODALQ96S42 347 aa20.36■□□□□ 0.85
SHMT1-203ENST00000354098 CGREF1Q99674 301 aa20.36■□□□□ 0.85
SHMT1-203ENST00000354098 TIMMDC1Q9NPL8 285 aa20.36■□□□□ 0.85
SHMT1-203ENST00000354098 G3V3Y1 287 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms