RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 VOPP1Q96AW1 172 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 WDR89Q96FK6 387 aaPredicted RBP6.39□□□□□ -1.39
VPS39-202ENST00000348544 SCRN2Q96FV2 425 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 ZNF354BQ96LW1 612 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 ERMAPQ96PL5 475 aaPredicted RBP6.39□□□□□ -1.39
VPS39-202ENST00000348544 SLC6A16Q9GZN6 736 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 OR51B5Q9H339 312 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 ISG20L2Q9H9L3 353 aaKnown RBP6.39□□□□□ -1.39
VPS39-202ENST00000348544 A4GALTQ9NPC4 353 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 CTPS2Q9NRF8 586 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 OR6C2Q9NZP2 312 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 TAAR2Q9P1P5 351 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 STOX2Q9P2F5 926 aaPredicted RBP6.39□□□□□ -1.39
VPS39-202ENST00000348544 ZMAT5Q9UDW3 170 aaKnown RBP6.39□□□□□ -1.39
VPS39-202ENST00000348544 GMEB2Q9UKD1 530 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 ACSL5Q9ULC5 683 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 COPS3Q9UNS2 423 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 OR51B4Q9Y5P0 310 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 KLF2Q9Y5W3 355 aaPredicted RBP6.39□□□□□ -1.39
VPS39-202ENST00000348544 DOCK6Q96HP0 2047 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 A0A1W2PRQ8 180 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 IRGMA1A4Y4 181 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 PRAMEF27A3QJZ7 478 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 C5orf58C9J3I9 102 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 SIGLEC5O15389 551 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 SGTAO43765 313 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 EFCAB14O75071 495 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 RGS9O75916 674 aaPredicted RBP6.38□□□□□ -1.39
VPS39-202ENST00000348544 EPPINO95925 133 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 ALDOBP05062 364 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 SRPRAP08240 638 aaKnown RBP6.38□□□□□ -1.39
VPS39-202ENST00000348544 IL3P08700 152 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 IRF1P10914 325 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 UGT2B7P16662 529 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 TBXA2RP21731 343 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 ATP5A1P25705 553 aaKnown RBP6.38□□□□□ -1.39
VPS39-202ENST00000348544 ACSL1P33121 698 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 ATP5C1P36542 298 aaKnown RBP6.38□□□□□ -1.39
VPS39-202ENST00000348544 MTNR1BP49286 362 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 EPHA4P54764 986 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 KIAA1024LP59773 190 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 ERVK-21P61565 698 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 ACSM1Q08AH1 577 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 SIGLEC14Q08ET2 396 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 PUS10Q3MIT2 529 aaKnown RBP6.38□□□□□ -1.39
VPS39-202ENST00000348544 KIAA1161Q6NSJ0 714 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 C1orf94Q6P1W5 598 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 MTFR2Q6P444 385 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 C3P1Q6ZMU1 363 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 BTN2A1Q7KYR7 527 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 LRRC56Q8IYG6 542 aaPredicted RBP6.38□□□□□ -1.39
VPS39-202ENST00000348544 TOMM5Q8N4H5 51 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 ANKRD53Q8N9V6 530 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 BBS1Q8NFJ9 593 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 MOSPD2Q8NHP6 518 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 THAP4Q8WY91 577 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 CNOT9Q92600 299 aaKnown RBP6.38□□□□□ -1.39
VPS39-202ENST00000348544 CLP1Q92989 425 aaKnown RBP6.38□□□□□ -1.39
VPS39-202ENST00000348544 NEIL2Q969S2 332 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 ELMOD3Q96FG2 381 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 ZNF416Q9BWM5 594 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 SORBS1Q9BX66 1292 aaKnown RBP6.38□□□□□ -1.39
VPS39-202ENST00000348544 CHIAQ9BZP6 476 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 CWH43Q9H720 699 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 BRD9Q9H8M2 597 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 MED9Q9NWA0 146 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 PIPOXQ9P0Z9 390 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 FLVCR2Q9UPI3 526 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 LIPT1Q9Y234 373 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 CHST2Q9Y4C5 530 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 PLSCR5A0PG75 271 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 SLC9B1P1A6NJY1 282 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 KRBOX1C9JBD0 128 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 LINC01387J3KSC0 135 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 DNASE2O00115 360 aaPredicted RBP6.38□□□□□ -1.39
VPS39-202ENST00000348544 COCHO43405 550 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 RNF13O43567 381 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 UBXN7O94888 489 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 SLC16A8O95907 504 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 CH25HO95992 272 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 TGFB1P01137 390 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 IGHA1P01876 353 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 FGF2P09038 288 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 ACP5P13686 325 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 GJA1P17302 382 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 UQCRC2P22695 453 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 VIPR1P32241 457 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 CSKP41240 450 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 CDH11P55287 796 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 DHODHQ02127 395 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 DUSP4Q13115 394 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 ZSWIM7Q19AV6 140 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 SLC25A35Q3KQZ1 300 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 HSD17B12Q53GQ0 312 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 CLEC12AQ5QGZ9 265 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 PLEKHS1Q5SXH7 462 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 AADACL4Q5VUY2 407 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 PYHIN1Q6K0P9 492 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 SFXN4Q6P4A7 337 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 ZNF322Q6U7Q0 402 aaPredicted RBP6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms