RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 FRZBQ92765 325 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 SAMD8Q96LT4 415 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 SFXN2Q96NB2 322 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 FER1L4A9Z1Z3 1794 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 DNASE1P24855 282 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 MAP2K3P46734 347 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 RCAN2Q14206 197 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 OR7A5Q15622 319 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 RTP2Q5QGT7 225 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 TMEM205Q6UW68 189 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 LIPIQ6XZB0 460 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 MRPL21Q7Z2W9 205 aaKnown RBP11.98□□□□□ -0.49
SDC3-201ENST00000336798 OR9A2Q8NGT5 310 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 ZNF160Q9HCG1 818 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 ARMC1Q9NVT9 282 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 TRAV18A0A075B6X5 111 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 IQCF3P0C7M6 154 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 ZNF28P17035 718 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 FOLR3P41439 243 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 GRM7Q14831 915 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 TECRLQ5HYJ1 363 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 ARHGAP11AQ6P4F7 1023 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 MAMDC2Q7Z304 686 aaPredicted RBP11.97□□□□□ -0.49
SDC3-201ENST00000336798 KBTBD6Q86V97 674 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 ZNF695Q8IW36 515 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 OR5AR1Q8NGP9 310 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 C16orf78Q8WTQ4 265 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 TMEM19Q96HH6 336 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 GPRC5BQ9NZH0 403 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 CNIH4Q9P003 139 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 USP36Q9P275 1121 aaKnown RBP11.97□□□□□ -0.49
SDC3-201ENST00000336798 PTRH2Q9Y3E5 179 aaKnown RBP11.97□□□□□ -0.49
SDC3-201ENST00000336798 A0A0G2JMP0 313 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 OR5K4A6NMS3 321 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 HTR2AP28223 471 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 SGSHP51688 502 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 ACTA2P62736 377 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 ACTG2P63267 376 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 EEF1A1P68104 462 aaKnown RBP11.97□□□□□ -0.49
SDC3-201ENST00000336798 ANKK1Q8NFD2 765 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 OR4M2Q8NGB6 313 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 TSPEARQ8WU66 669 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 CHPT1Q8WUD6 406 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 IMP4Q96G21 291 aaKnown RBP11.97□□□□□ -0.49
SDC3-201ENST00000336798 CRB3Q9BUF7 120 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 LMAN1LQ9HAT1 526 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 ZNF840PA6NDX5 716 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 MAN2B1O00754 1011 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 RGS6P49758 472 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 ATG9BQ674R7 924 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 TP53INP2Q8IXH6 220 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 NANOS1Q8WY41 292 aaKnown RBP11.97□□□□□ -0.49
SDC3-201ENST00000336798 BORCS7Q96B45 105 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 INPP5KQ9BT40 448 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 FKRPQ9H9S5 495 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 OR52A4PA6NMU1 304 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 AGPAT2O15120 278 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 FRS3O43559 492 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 MITFO75030 526 aaPredicted RBP11.97□□□□□ -0.49
SDC3-201ENST00000336798 LDB3O75112 727 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 S1PR4O95977 384 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 BPIP17213 487 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 PTPN6P29350 595 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 SLC10A2Q12908 348 aaPredicted RBP11.97□□□□□ -0.49
SDC3-201ENST00000336798 SNTB2Q13425 540 aaKnown RBP11.97□□□□□ -0.49
SDC3-201ENST00000336798 NDUFAF5Q5TEU4 345 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 ALOXE3Q9BYJ1 711 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 SLC25A18Q9H1K4 315 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 ABOP16442 354 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 GABRA2P47869 451 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 EEF1A2Q05639 463 aaKnown RBP11.97□□□□□ -0.49
SDC3-201ENST00000336798 ELAVL3Q14576 367 aaKnown RBP11.97□□□□□ -0.49
SDC3-201ENST00000336798 RAB6CQ53S08 254 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 TMEM173Q86WV6 379 aaPredicted RBP11.97□□□□□ -0.49
SDC3-201ENST00000336798 OR7G1Q8NGA0 311 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 SLC2A12Q8TD20 617 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 ZMYND19Q96E35 227 aaPredicted RBP11.97□□□□□ -0.49
SDC3-201ENST00000336798 C1orf74Q96LT6 269 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 LPAR4Q99677 370 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 RAB6CQ9H0N0 254 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 PPIL3Q9H2H8 161 aaKnown RBP11.97□□□□□ -0.49
SDC3-201ENST00000336798 LINC00597Q9H2U6 94 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 IL23AQ9NPF7 189 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 CAMK2AQ9UQM7 478 aa11.97□□□□□ -0.49
SDC3-201ENST00000336798 C17orf105B2RV13 164 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 M0R3H8 397 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 MPIG6BO95866 241 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 GDF1P27539 372 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 ADH6P28332 368 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 CDKN2CP42773 168 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 TRAM1Q15629 374 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 GPR155Q7Z3F1 870 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 GNG13Q9P2W3 67 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 TMEM14AQ9Y6G1 99 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 SERPINA7P05543 415 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 ARSAP15289 507 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 ERVK-16P61578 105 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 TAP2Q03519 686 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 RELAQ04206 551 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 OR8J3Q8NGG0 315 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms