RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 CRTC3Q6UUV7 619 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 TMEM108Q6UXF1 575 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 GLDNQ6ZMI3 551 aaPredicted RBP1.31□□□□□ -2.2
LINC00643-201ENST00000334389 Q6ZUG5 572 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 GGNQ86UU5 652 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 GPBP1Q86WP2 473 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 SCN4BQ8IWT1 228 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 OR4N5Q8IXE1 308 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 FMR1NBQ8N0W7 255 aaPredicted RBP1.31□□□□□ -2.2
LINC00643-201ENST00000334389 CARNMT1Q8N4J0 409 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 SPICQ8N5J4 248 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 CEP112Q8N8E3 955 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 ZNF417Q8TAU3 575 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 LRRC8CQ8TDW0 803 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 ST8SIA1Q92185 356 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 HSPH1Q92598 858 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 ZNF503Q96F45 646 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 ZNF587Q96SQ5 575 aaPredicted RBP1.31□□□□□ -2.2
LINC00643-201ENST00000334389 SELENOSQ9BQE4 189 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 POLR3GLQ9BT43 218 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 UPK3BQ9BT76 320 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 CRB3Q9BUF7 120 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 PAXXQ9BUH6 204 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 WDR12Q9GZL7 423 aaKnown RBP1.31□□□□□ -2.2
LINC00643-201ENST00000334389 SCAND2PQ9GZW5 306 aaPredicted RBP1.31□□□□□ -2.2
LINC00643-201ENST00000334389 CCDC68Q9H2F9 335 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 SPNS1Q9H2V7 528 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 TMPRSS5Q9H3S3 457 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 PLEKHA1Q9HB21 404 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 ZC4H2Q9NQZ6 224 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 PIGVQ9NUD9 493 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 SLCO1C1Q9NYB5 712 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 C3orf18Q9UK00 162 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 VPREB3Q9UKI3 123 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 CFAP45Q9UL16 551 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 EXO1Q9UQ84 846 aaKnown RBP1.31□□□□□ -2.2
LINC00643-201ENST00000334389 LYVE1Q9Y5Y7 322 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 MINOS1-NBL1R4GNA1 71 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 IGHV4-30-2A0A087WSY4 118 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 TRAV25A0A0B4J276 109 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 A0A1B0GTH9 108 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 FAM90A22PA8MWA6 464 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 B4DGG1 531 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 H3BNG1 76 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 DYNC1I1O14576 645 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 DVL1O14640 695 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 B4GALT2O60909 372 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 PTHP01270 115 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 STATHP02808 62 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 HEXBP07686 556 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 CT62P0C5K7 136 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 CYP11B1P15538 503 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 ALOX12P18054 663 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 AOAHP28039 575 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 GJB2P29033 226 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 AGTR1P30556 359 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 MAT2AP31153 395 aaKnown RBP1.31□□□□□ -2.2
LINC00643-201ENST00000334389 CA8P35219 290 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 ARR3P36575 388 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 GPR1P46091 355 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 CCT3P49368 545 aaKnown RBP1.31□□□□□ -2.2
LINC00643-201ENST00000334389 EFNA3P52797 238 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 ITGA8P53708 1063 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 SEC24CP53992 1094 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 SLC37A1P57057 533 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 CLDN2P57739 230 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 PRR5P85299 388 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 CD83Q01151 205 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 TYRO3Q06418 890 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 PRDX1Q06830 199 aaKnown RBP1.31□□□□□ -2.2
LINC00643-201ENST00000334389 TGM3Q08188 693 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 ADIGQ0VDE8 80 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 THOC5Q13769 683 aaKnown RBP1.31□□□□□ -2.2
LINC00643-201ENST00000334389 DOC2AQ14183 400 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 LARS2Q15031 903 aaKnown RBP1.31□□□□□ -2.2
LINC00643-201ENST00000334389 KCTD21Q4G0X4 260 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 LINC01620Q4KN68 170 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 MEI1Q5TIA1 1274 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 ZNF774Q6NX45 483 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 C16orf46Q6P387 395 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 DRICH1Q6PGQ1 229 aaPredicted RBP1.31□□□□□ -2.2
LINC00643-201ENST00000334389 C16orf54Q6UWD8 224 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 UNQ6126/PRO20091Q6UXV3 157 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 Q6ZRU5 148 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 MEPCEQ7L2J0 689 aaKnown RBP1.31□□□□□ -2.2
LINC00643-201ENST00000334389 H2BFWTQ7Z2G1 175 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 MDGA2Q7Z553 956 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 TFAP2DQ7Z6R9 452 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 STK32CQ86UX6 486 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 HOOK3Q86VS8 718 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 TRIM59Q8IWR1 403 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 DDIASQ8IXT1 998 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 PLD6Q8N2A8 252 aaKnown RBP1.31□□□□□ -2.2
LINC00643-201ENST00000334389 PARP8Q8N3A8 854 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 OTUD6BQ8N6M0 293 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 ZNF433Q8N7K0 673 aaPredicted RBP1.31□□□□□ -2.2
LINC00643-201ENST00000334389 OR2L3Q8NG85 312 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 OR10Z1Q8NGY1 313 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 PIGXQ8TBF5 258 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 FNDC8Q8TC99 324 aa1.31□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms