RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 SLC25A30Q5SVS4 291 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 IL23RQ5VWK5 629 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 RNLSQ5VYX0 342 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 SPINK14Q6IE38 97 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 ZNF774Q6NX45 483 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 FAM159AQ6UWV7 190 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 APOOLQ6UXV4 268 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 DPY19L2P2Q6ZN68 376 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 SERINC5Q86VE9 423 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 UNC5CLQ8IV45 518 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 KDM8Q8N371 416 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 SUMF1Q8NBK3 374 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 TBCKQ8TEA7 893 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 AGAP11Q8TF27 550 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 PHYHIPQ92561 330 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 DEFB118Q96PH6 123 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 FAM111AQ96PZ2 611 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 FAM173AQ9BQD7 235 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 APOL2Q9BQE5 337 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 NDUFAF3Q9BU61 184 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 TRIM9Q9C026 710 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 RNF41Q9H4P4 317 aaPredicted RBP2.61□□□□□ -1.99
HMGB1-201ENST00000326004 NRN1Q9NPD7 142 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 STARD5Q9NSY2 213 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 RAI14Q9P0K7 980 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 BCAP29Q9UHQ4 241 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 IKZF3Q9UKT9 509 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 RNF24Q9Y225 148 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 KLHDC2Q9Y2U9 406 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 SPHKAPQ2M3C7 1700 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 ABCC3O15438 1527 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 PRDM15P57071 1507 aaPredicted RBP2.61□□□□□ -1.99
HMGB1-201ENST00000326004 ZMYM6O95789 1325 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 ADGRB2O60241 1585 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 BRWD3Q6RI45 1802 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 PTCH1Q13635 1447 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 A0A087WWV3 80 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 ZNF840PA6NDX5 716 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 K7ERI5 159 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 LRRTM2O43300 516 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 ZNF354AO60765 605 aaPredicted RBP2.6□□□□□ -1.99
HMGB1-201ENST00000326004 PDE5AO76074 875 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 STK17BO94768 372 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 VENTXO95231 258 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 TRIM16O95361 564 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 ECDO95905 644 aaPredicted RBP2.6□□□□□ -1.99
HMGB1-201ENST00000326004 OAS1P00973 400 aaKnown RBP2.6□□□□□ -1.99
HMGB1-201ENST00000326004 HEXBP07686 556 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 RALAP11233 206 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 RPA1P27694 616 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 SAA4P35542 130 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 TRIM23P36406 574 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 CAMLGP49069 296 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 SGSHP51688 502 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 VCPP55072 806 aaKnown RBP2.6□□□□□ -1.99
HMGB1-201ENST00000326004 KRTAP10-7P60409 375 aaPredicted RBP2.6□□□□□ -1.99
HMGB1-201ENST00000326004 KRTAP10-12P60413 245 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 MYBPC1Q00872 1141 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 NAAAQ02083 359 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 BNIP1Q12981 228 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 SNX1Q13596 522 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 CRMP1Q14194 572 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 CD226Q15762 336 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 ZSWIM7Q19AV6 140 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 AGKQ53H12 422 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 FAM219BQ5XKK7 198 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.6□□□□□ -1.99
HMGB1-201ENST00000326004 BAIAP2L2Q6UXY1 529 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 WDR88Q6ZMY6 472 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 ZNF600Q6ZNG1 722 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 GOLGA7Q7Z5G4 137 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 VPS36Q86VN1 386 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 LCA5Q86VQ0 697 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 AMZ2Q86W34 360 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 ZNF540Q8NDQ6 660 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 ZBED6CLQ96FA7 236 aaPredicted RBP2.6□□□□□ -1.99
HMGB1-201ENST00000326004 TSPAN18Q96SJ8 248 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 NLNQ9BYT8 704 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 RPS10P5Q9NQ39 176 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 CENPMQ9NSP4 180 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 CUTCQ9NTM9 273 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 SPASTQ9UBP0 616 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 PURGQ9UJV8 347 aaKnown RBP2.6□□□□□ -1.99
HMGB1-201ENST00000326004 ZNF490Q9ULM2 529 aaPredicted RBP2.6□□□□□ -1.99
HMGB1-201ENST00000326004 SMAD5-AS1Q9Y6J3 95 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 CLCA3PQ9Y6N3 262 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 AP1M2Q9Y6Q5 423 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 ATP8B3O60423 1300 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 UBE4BO95155 1302 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 BIVM-ERCC5R4GMW8 1640 aa2.6□□□□□ -1.99
HMGB1-201ENST00000326004 ZC3H13Q5T200 1668 aaKnown RBP2.6□□□□□ -1.99
HMGB1-201ENST00000326004 DISP2A7MBM2 1401 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 UTRNP46939 3433 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 UGGT2Q9NYU1 1516 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 GLI3P10071 1580 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 PDLIM1O00151 329 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 TYROBPO43914 113 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 SRSF10O75494 262 aaKnown RBP2.59□□□□□ -1.99
HMGB1-201ENST00000326004 MT-ATP6P00846 226 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 IFNB1P01574 187 aa2.59□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms