RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 TBX18O95935 607 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 EPHA1P21709 976 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 LEG1Q6P5S2 330 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 RDH10Q8IZV5 341 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 BOLLQ8N9W6 283 aaKnown RBP13.2□□□□□ -0.3
CSPG4-201ENST00000308508 HMGB4Q8WW32 186 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 ZNF587Q96SQ5 575 aaPredicted RBP13.2□□□□□ -0.3
CSPG4-201ENST00000308508 FBXL12Q9NXK8 326 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 ARPC1BO15143 372 aaKnown RBP13.19□□□□□ -0.3
CSPG4-201ENST00000308508 SYT7O43581 403 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 CAPNS1P04632 268 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 DRD2P14416 443 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 FKBP1BP68106 108 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 ID2Q02363 134 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 SHFQ7M4L6 423 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 RSC1A1Q92681 617 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 SPTSSAQ969W0 71 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 UHRF1Q96T88 793 aaPredicted RBP13.19□□□□□ -0.3
CSPG4-201ENST00000308508 BTBD2Q9BX70 525 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 SLC2A11Q9BYW1 496 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 PSAT1Q9Y617 370 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 D6RAR5 112 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 HOXA9P31269 272 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 CNR2P34972 360 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 ETV1P50549 477 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 TAS2R30P59541 319 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 CDK5R2Q13319 367 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 MICAQ29983 383 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 TIGD5Q53EQ6 642 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 CLVS2Q5SYC1 327 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 PPP2R2DQ66LE6 453 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 PRSS55Q6UWB4 352 aaPredicted RBP13.19□□□□□ -0.3
CSPG4-201ENST00000308508 ZNF417Q8TAU3 575 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 LRRC46Q96FV0 321 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 OR1F2PQ96R84 312 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 COL3A1P02461 1466 aaPredicted RBP13.19□□□□□ -0.3
CSPG4-201ENST00000308508 A0A0D9SG52 128 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 H7BY64 318 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 TOR1AO14656 332 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 C1GALT1C1LP0DN25 315 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 RBMS1P29558 406 aaKnown RBP13.19□□□□□ -0.3
CSPG4-201ENST00000308508 ETV6P41212 452 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 NDUFAF5Q5TEU4 345 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 ZNF776Q68DI1 518 aaPredicted RBP13.19□□□□□ -0.3
CSPG4-201ENST00000308508 RFPL4BQ6ZWI9 263 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 DAZAP1Q96EP5 407 aaKnown RBP13.19□□□□□ -0.3
CSPG4-201ENST00000308508 PRAP1Q96NZ9 151 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 OR2M2Q96R28 347 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 GAS2L1Q99501 681 aaPredicted RBP13.19□□□□□ -0.3
CSPG4-201ENST00000308508 SAGE1Q9NXZ1 904 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 B4GALT7Q9UBV7 327 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 TESQ9UGI8 421 aaKnown RBP13.19□□□□□ -0.3
CSPG4-201ENST00000308508 IGLV3-22A0A075B6J6 115 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 NPC1O15118 1278 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 DCP2Q8IU60 420 aaKnown RBP13.19□□□□□ -0.3
CSPG4-201ENST00000308508 IL17RCQ8NAC3 791 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 HRH4Q9H3N8 390 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 FZD8Q9H461 694 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 NPAP1Q9NZP6 1156 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 AJAP1Q9UKB5 411 aaPredicted RBP13.19□□□□□ -0.3
CSPG4-201ENST00000308508 BCL9O00512 1426 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 ONECUT3O60422 494 aaPredicted RBP13.19□□□□□ -0.3
CSPG4-201ENST00000308508 FKTNO75072 461 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 TMEM225BP0DP42 221 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 CLDN8P56748 225 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 PRPS1P60891 318 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 RTL6Q6ICC9 239 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 TSSK4Q6SA08 328 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 ZNF704Q6ZNC4 412 aaPredicted RBP13.19□□□□□ -0.3
CSPG4-201ENST00000308508 SLC2A12Q8TD20 617 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 CHTF18Q8WVB6 975 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 ZNF516Q92618 1163 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 PLEKHJ1Q9NW61 149 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 PROS1P07225 676 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 TMEM115Q12893 351 aaPredicted RBP13.19□□□□□ -0.3
CSPG4-201ENST00000308508 DUSP7Q16829 419 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 FAM110CQ1W6H9 321 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 IGDCC3Q8IVU1 814 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 TSTD1Q8NFU3 115 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 NPLOC4Q8TAT6 608 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 MITD1Q8WV92 249 aa13.19□□□□□ -0.3
CSPG4-201ENST00000308508 MMABQ96EY8 250 aaPredicted RBP13.19□□□□□ -0.3
CSPG4-201ENST00000308508 VEGFDO43915 354 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 ALDOAP04075 364 aaKnown RBP13.18□□□□□ -0.3
CSPG4-201ENST00000308508 ACRV1P26436 265 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 RAP2BP61225 183 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 PLAG1Q6DJT9 500 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 TANGO2Q6ICL3 276 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 ASPGQ86U10 573 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 ANKK1Q8NFD2 765 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 SYNPRQ8TBG9 265 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 SNX18Q96RF0 628 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 BCO2Q9BYV7 579 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 BCAS3Q9H6U6 928 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 ARID1BQ8NFD5 2236 aaPredicted RBP13.18□□□□□ -0.3
CSPG4-201ENST00000308508 C2orf72A6NCS6 295 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 PRAMEF11O60813 436 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 PEX14O75381 377 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 ADH1BP00325 375 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 SOX3P41225 446 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms