RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 CEP250Q9BV73 2442 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 CFAP54Q96N23 3096 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 CCDC88CQ9P219 2028 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 LRRC72A6NJI9 287 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 J3KTA2 159 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 QSOX1O00391 747 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 PLRG1O43660 514 aaKnown RBP9.72□□□□□ -0.85
UPF3B-201ENST00000276201 SLC19A2O60779 497 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 TBX19O60806 448 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 CLDN7O95471 211 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 SLC2A2P11168 524 aaPredicted RBP9.72□□□□□ -0.85
UPF3B-201ENST00000276201 ZNF8P17098 575 aaPredicted RBP9.72□□□□□ -0.85
UPF3B-201ENST00000276201 TNFRSF1BP20333 461 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 OR1E2P47887 323 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 XKP51811 444 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 ZNF763Q0D2J5 394 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 DOC2AQ14183 400 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 ZNF385BQ569K4 471 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 MZT2AQ6P582 158 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 TMEM107Q6UX40 140 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 PARS2Q7L3T8 475 aaKnown RBP9.72□□□□□ -0.85
UPF3B-201ENST00000276201 MRGPREQ86SM8 312 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 THOC6Q86W42 341 aaKnown RBP9.72□□□□□ -0.85
UPF3B-201ENST00000276201 TRIM48Q8IWZ4 208 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 SLC38A6Q8IZM9 456 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 TAGAPQ8N103 731 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 NATD1Q8N6N6 113 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 HUS1BQ8NHY5 278 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 ZBED6CLQ96FA7 236 aaPredicted RBP9.72□□□□□ -0.85
UPF3B-201ENST00000276201 PPP1R16AQ96I34 528 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 QRFPRQ96P65 431 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 ORAI3Q9BRQ5 295 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 PIGUQ9H490 435 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 ICKQ9UPZ9 632 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 PSIP1O75475 530 aaKnown RBP9.71□□□□□ -0.85
UPF3B-201ENST00000276201 SLCO2B1O94956 709 aa9.71□□□□□ -0.85
UPF3B-201ENST00000276201 OPN1SWP03999 348 aa9.71□□□□□ -0.85
UPF3B-201ENST00000276201 TP53P04637 393 aaPredicted RBP9.71□□□□□ -0.85
UPF3B-201ENST00000276201 FURINP09958 794 aa9.71□□□□□ -0.85
UPF3B-201ENST00000276201 ARSBP15848 533 aa9.71□□□□□ -0.85
UPF3B-201ENST00000276201 ELAVL4P26378 380 aaKnown RBP9.71□□□□□ -0.85
UPF3B-201ENST00000276201 MAN2A2P49641 1150 aa9.71□□□□□ -0.85
UPF3B-201ENST00000276201 PPP2CBP62714 309 aa9.71□□□□□ -0.85
UPF3B-201ENST00000276201 PPP2CAP67775 309 aa9.71□□□□□ -0.85
UPF3B-201ENST00000276201 HBA1P69905 142 aa9.71□□□□□ -0.85
UPF3B-201ENST00000276201 TAGLNQ01995 201 aaKnown RBP9.71□□□□□ -0.85
UPF3B-201ENST00000276201 RAB40BQ12829 278 aa9.71□□□□□ -0.85
UPF3B-201ENST00000276201 MRPL28Q13084 256 aaKnown RBP9.71□□□□□ -0.85
UPF3B-201ENST00000276201 WSCD2Q2TBF2 565 aa9.71□□□□□ -0.85
UPF3B-201ENST00000276201 XKR6Q5GH73 641 aa9.71□□□□□ -0.85
UPF3B-201ENST00000276201 LIPKQ5VXJ0 399 aa9.71□□□□□ -0.85
UPF3B-201ENST00000276201 REEP3Q6NUK4 255 aa9.71□□□□□ -0.85
UPF3B-201ENST00000276201 CEACAM20Q6UY09 585 aa9.71□□□□□ -0.85
UPF3B-201ENST00000276201 IKBIPQ70UQ0 350 aa9.71□□□□□ -0.85
UPF3B-201ENST00000276201 ERN2Q76MJ5 926 aaKnown RBP9.71□□□□□ -0.85
UPF3B-201ENST00000276201 OR56A3Q8NH54 315 aa9.71□□□□□ -0.85
UPF3B-201ENST00000276201 C1orf216Q8TAB5 229 aa9.71□□□□□ -0.85
UPF3B-201ENST00000276201 ACOT12Q8WYK0 555 aa9.71□□□□□ -0.85
UPF3B-201ENST00000276201 LRIG1Q96JA1 1093 aa9.71□□□□□ -0.85
UPF3B-201ENST00000276201 RANBP3Q9H6Z4 567 aaPredicted RBP9.71□□□□□ -0.85
UPF3B-201ENST00000276201 RXFP3Q9NSD7 469 aa9.71□□□□□ -0.85
UPF3B-201ENST00000276201 POLHQ9Y253 713 aa9.71□□□□□ -0.85
UPF3B-201ENST00000276201 PI4KAP42356 2102 aa9.71□□□□□ -0.86
UPF3B-201ENST00000276201 FAM240BA0A1B0GVZ2 78 aa9.71□□□□□ -0.86
UPF3B-201ENST00000276201 PIPSLA2A3N6 862 aa9.71□□□□□ -0.86
UPF3B-201ENST00000276201 C7orf66A4D0T2 115 aa9.71□□□□□ -0.86
UPF3B-201ENST00000276201 TUBAL3A6NHL2 446 aa9.71□□□□□ -0.86
UPF3B-201ENST00000276201 WASHC1A8K0Z3 465 aa9.71□□□□□ -0.86
UPF3B-201ENST00000276201 FFAR1O14842 300 aa9.71□□□□□ -0.86
UPF3B-201ENST00000276201 KHNYNO15037 678 aaKnown RBP9.71□□□□□ -0.86
UPF3B-201ENST00000276201 PRKYO43930 277 aa9.71□□□□□ -0.86
UPF3B-201ENST00000276201 SLC22A5O76082 557 aa9.71□□□□□ -0.86
UPF3B-201ENST00000276201 NR2F6P10588 404 aa9.71□□□□□ -0.86
UPF3B-201ENST00000276201 PRKACBP22694 351 aa9.71□□□□□ -0.86
UPF3B-201ENST00000276201 UQCRC2P22695 453 aa9.71□□□□□ -0.86
UPF3B-201ENST00000276201 CCR5P51681 352 aa9.71□□□□□ -0.86
UPF3B-201ENST00000276201 ZNF805Q5CZA5 627 aa9.71□□□□□ -0.86
UPF3B-201ENST00000276201 TRIM61Q5EBN2 209 aa9.71□□□□□ -0.86
UPF3B-201ENST00000276201 DCST1Q5T197 706 aa9.71□□□□□ -0.86
UPF3B-201ENST00000276201 FAM71E1Q6IPT2 247 aa9.71□□□□□ -0.86
UPF3B-201ENST00000276201 GDPD4Q6W3E5 623 aa9.71□□□□□ -0.86
UPF3B-201ENST00000276201 CDH24Q86UP0 819 aa9.71□□□□□ -0.86
UPF3B-201ENST00000276201 FAM20CQ8IXL6 584 aa9.71□□□□□ -0.86
UPF3B-201ENST00000276201 Q8N402 240 aa9.71□□□□□ -0.86
UPF3B-201ENST00000276201 TMEM145Q8NBT3 493 aa9.71□□□□□ -0.86
UPF3B-201ENST00000276201 GPR26Q8NDV2 337 aa9.71□□□□□ -0.86
UPF3B-201ENST00000276201 RADILQ96JH8 1075 aa9.71□□□□□ -0.86
UPF3B-201ENST00000276201 WRAP53Q9BUR4 548 aaKnown RBP9.71□□□□□ -0.86
UPF3B-201ENST00000276201 CAPN10Q9HC96 672 aa9.71□□□□□ -0.86
UPF3B-201ENST00000276201 TAS2R7Q9NYW3 318 aa9.71□□□□□ -0.86
UPF3B-201ENST00000276201 DNAJC27Q9NZQ0 273 aa9.71□□□□□ -0.86
UPF3B-201ENST00000276201 TBC1D3DA0A087WVF3 549 aa9.7□□□□□ -0.86
UPF3B-201ENST00000276201 TBC1D3IA0A087WXS9 549 aa9.7□□□□□ -0.86
UPF3B-201ENST00000276201 TBC1D3EA0A087X179 549 aa9.7□□□□□ -0.86
UPF3B-201ENST00000276201 TBC1D3KA0A087X1G2 549 aa9.7□□□□□ -0.86
UPF3B-201ENST00000276201 TRBV4-1A0A0J9YWV2 114 aa9.7□□□□□ -0.86
UPF3B-201ENST00000276201 LNP1A1A4G5 178 aa9.7□□□□□ -0.86
UPF3B-201ENST00000276201 TBC1D3FA6NER0 549 aaPredicted RBP9.7□□□□□ -0.86
UPF3B-201ENST00000276201 SNTNA6NMZ2 147 aa9.7□□□□□ -0.86
UPF3B-201ENST00000276201 TBC1D3LB9A6J9 549 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms