RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 PIK3C3Q8NEB9 887 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 TRNT1Q96Q11 434 aaKnown RBP15.34■□□□□ 0.05
USP4-201ENST00000265560 ZNF304Q9HCX3 659 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 BCL2L10Q9HD36 194 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 LANCL2Q9NS86 450 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 PNPLA3Q9NST1 481 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 FBXO4Q9UKT5 387 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 HEATR5AQ86XA9 2040 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 CDC14CA4D256 554 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 C17orf105B2RV13 164 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 OR6B1O95007 311 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 BMP10O95393 424 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 GASTP01350 101 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 PABPC4LP0CB38 370 aaKnown RBP15.34■□□□□ 0.05
USP4-201ENST00000265560 ITGA2P17301 1181 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 RHCEP18577 417 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 CLK3P49761 638 aaKnown RBP15.34■□□□□ 0.05
USP4-201ENST00000265560 PSG6Q00889 435 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 NPTX1Q15818 432 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 CTU2Q2VPK5 515 aaKnown RBP15.34■□□□□ 0.05
USP4-201ENST00000265560 TMEM236Q5W0B7 351 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 SATL1Q86VE3 508 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 ZBTB44Q8NCP5 570 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 ZNF347Q96SE7 839 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 NRSN2Q9GZP1 204 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 PIGUQ9H490 435 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 ZNF768Q9H5H4 540 aaKnown RBP15.34■□□□□ 0.05
USP4-201ENST00000265560 LIN28AQ9H9Z2 209 aaKnown RBP15.34■□□□□ 0.05
USP4-201ENST00000265560 USE1Q9NZ43 259 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 NTMQ9P121 344 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 MKL2Q9ULH7 1088 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 MYRFQ9Y2G1 1151 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 PTPRZ1P23471 2315 aaPredicted RBP15.34■□□□□ 0.05
USP4-201ENST00000265560 PRG2P13727 222 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 POU1F1P28069 291 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 KLHL17Q6TDP4 642 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 AQP11Q8NBQ7 271 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 OR4C15Q8NGM1 316 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 RNF217Q8TC41 542 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 SLC7A13Q8TCU3 470 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 EPYCQ99645 322 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 H3BNH8 94 aa15.33■□□□□ 0.05
USP4-201ENST00000265560 DNAJB5O75953 348 aa15.33■□□□□ 0.05
USP4-201ENST00000265560 LGI1O95970 557 aa15.33■□□□□ 0.05
USP4-201ENST00000265560 ETS2P15036 469 aa15.33■□□□□ 0.05
USP4-201ENST00000265560 FBLP22087 321 aaKnown RBP15.33■□□□□ 0.05
USP4-201ENST00000265560 TRHRP34981 398 aaPredicted RBP15.33■□□□□ 0.05
USP4-201ENST00000265560 RAD23AP54725 363 aa15.33■□□□□ 0.05
USP4-201ENST00000265560 NSDHLQ15738 373 aa15.33■□□□□ 0.05
USP4-201ENST00000265560 MICAQ29983 383 aa15.33■□□□□ 0.05
USP4-201ENST00000265560 FOXB2Q5VYV0 432 aa15.33■□□□□ 0.05
USP4-201ENST00000265560 DESI1Q6ICB0 168 aa15.33■□□□□ 0.05
USP4-201ENST00000265560 HEPHL1Q6MZM0 1159 aa15.33■□□□□ 0.05
USP4-201ENST00000265560 SLC23A3Q6PIS1 610 aa15.33■□□□□ 0.05
USP4-201ENST00000265560 LANCL3Q6ZV70 420 aa15.33■□□□□ 0.05
USP4-201ENST00000265560 USP51Q70EK9 711 aa15.33■□□□□ 0.05
USP4-201ENST00000265560 C16orf52Q8NHV5 167 aa15.33■□□□□ 0.05
USP4-201ENST00000265560 SLC13A4Q9UKG4 626 aa15.33■□□□□ 0.05
USP4-201ENST00000265560 A4GNTQ9UNA3 340 aa15.33■□□□□ 0.05
USP4-201ENST00000265560 PCNX2A6NKB5 2137 aa15.33■□□□□ 0.04
USP4-201ENST00000265560 H0YIG0 161 aa15.33■□□□□ 0.04
USP4-201ENST00000265560 BCKDKO14874 412 aa15.33■□□□□ 0.04
USP4-201ENST00000265560 SOX14O95416 240 aa15.33■□□□□ 0.04
USP4-201ENST00000265560 CER1O95813 267 aa15.33■□□□□ 0.04
USP4-201ENST00000265560 HPRP00739 348 aa15.33■□□□□ 0.04
USP4-201ENST00000265560 IGKV1D-16P01601 117 aa15.33■□□□□ 0.04
USP4-201ENST00000265560 IL5RAQ01344 420 aa15.33■□□□□ 0.04
USP4-201ENST00000265560 PRSS42Q7Z5A4 293 aa15.33■□□□□ 0.04
USP4-201ENST00000265560 CDRT4Q8N9R6 151 aa15.33■□□□□ 0.04
USP4-201ENST00000265560 TSPAN14Q8NG11 270 aa15.33■□□□□ 0.04
USP4-201ENST00000265560 EPB41L1Q9H4G0 881 aa15.33■□□□□ 0.04
USP4-201ENST00000265560 FOLH1BQ9HBA9 442 aa15.33■□□□□ 0.04
USP4-201ENST00000265560 LIPT1Q9Y234 373 aa15.33■□□□□ 0.04
USP4-201ENST00000265560 LNP1A1A4G5 178 aa15.32■□□□□ 0.04
USP4-201ENST00000265560 SYNDIG1LA6NDD5 238 aa15.32■□□□□ 0.04
USP4-201ENST00000265560 A6NHS1 94 aa15.32■□□□□ 0.04
USP4-201ENST00000265560 OR10H3O60404 316 aa15.32■□□□□ 0.04
USP4-201ENST00000265560 CLPTM1O96005 669 aa15.32■□□□□ 0.04
USP4-201ENST00000265560 CD47Q08722 323 aa15.32■□□□□ 0.04
USP4-201ENST00000265560 SF3A2Q15428 464 aaKnown RBP15.32■□□□□ 0.04
USP4-201ENST00000265560 SMN1Q16637 294 aaKnown RBP15.32■□□□□ 0.04
USP4-201ENST00000265560 ZNF605Q86T29 641 aa15.32■□□□□ 0.04
USP4-201ENST00000265560 SLC22A11Q9NSA0 550 aa15.32■□□□□ 0.04
USP4-201ENST00000265560 HEMK1Q9Y5R4 338 aaPredicted RBP15.32■□□□□ 0.04
USP4-201ENST00000265560 A0A087WV62 115 aa15.32■□□□□ 0.04
USP4-201ENST00000265560 EEF1B2P24534 225 aaKnown RBP15.32■□□□□ 0.04
USP4-201ENST00000265560 ST13P50502 369 aaKnown RBP15.32■□□□□ 0.04
USP4-201ENST00000265560 ELOAQ14241 798 aaKnown RBP15.32■□□□□ 0.04
USP4-201ENST00000265560 ARHGAP11BQ3KRB8 267 aa15.32■□□□□ 0.04
USP4-201ENST00000265560 NPSR1Q6W5P4 371 aa15.32■□□□□ 0.04
USP4-201ENST00000265560 C8orf59Q8N0T1 100 aaPredicted RBP15.32■□□□□ 0.04
USP4-201ENST00000265560 METTL25Q8N6Q8 603 aa15.32■□□□□ 0.04
USP4-201ENST00000265560 POP5Q969H6 163 aaKnown RBP15.32■□□□□ 0.04
USP4-201ENST00000265560 PMEPA1Q969W9 287 aa15.32■□□□□ 0.04
USP4-201ENST00000265560 SENP5Q96HI0 755 aaPredicted RBP15.32■□□□□ 0.04
USP4-201ENST00000265560 RHNO1Q9BSD3 238 aa15.32■□□□□ 0.04
USP4-201ENST00000265560 SLC9A8Q9Y2E8 581 aa15.32■□□□□ 0.04
USP4-201ENST00000265560 MUC6Q6W4X9 2439 aa15.32■□□□□ 0.04
USP4-201ENST00000265560 ALPK2Q86TB3 2170 aa15.32■□□□□ 0.04
USP4-201ENST00000265560 PTGES3LE9PB15 166 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms