RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 NPTX1Q15818 432 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 GUSBP11Q6P575 273 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 RBM44Q6ZP01 1051 aaKnown RBP10.84□□□□□ -0.67
VPS4A-201ENST00000254950 SLC25A36Q96CQ1 311 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 NUDT22Q9BRQ3 303 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 SERHLQ9NQF3 203 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 FBXO4Q9UKT5 387 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 CBLCQ9ULV8 474 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 C19orf53Q9UNZ5 99 aaPredicted RBP10.84□□□□□ -0.67
VPS4A-201ENST00000254950 ANKRD36A6QL64 1941 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 P2RX6O15547 441 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 FLRT2O43155 660 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 PGCP20142 388 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 MAOAP21397 527 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 AHCYP23526 432 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 PPP1CAP62136 330 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 GPR107Q5VW38 600 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 FCRL6Q6DN72 434 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 LRRC56Q8IYG6 542 aaPredicted RBP10.84□□□□□ -0.67
VPS4A-201ENST00000254950 DNASE2BQ8WZ79 361 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 TAMM41Q96BW9 452 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 CDC6Q99741 560 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 OR10A5Q9H207 317 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 UCK1Q9HA47 277 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 ABCG2Q9UNQ0 655 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 HEMK1Q9Y5R4 338 aaPredicted RBP10.84□□□□□ -0.67
VPS4A-201ENST00000254950 CROCCQ5TZA2 2017 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 UNC13CQ8NB66 2214 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 IGHV5-51A0A0C4DH38 117 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 LOC100506127A0A0U1RQW1 187 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 ASNA1O43681 348 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 WNT1P04628 370 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 CCL7P80098 99 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 VLDLRP98155 873 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 GINS1Q14691 196 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 SENP5Q96HI0 755 aaPredicted RBP10.84□□□□□ -0.67
VPS4A-201ENST00000254950 PRRC1Q96M27 445 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 CTRCQ99895 268 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 OR51V1Q9H2C8 321 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 CXorf56Q9H5V9 222 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 FAM118AQ9NWS6 357 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 ABCA7Q8IZY2 2146 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 DSCR3O14972 297 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 DENRO43583 198 aaKnown RBP10.83□□□□□ -0.68
VPS4A-201ENST00000254950 HCN1O60741 890 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 PPM1BO75688 479 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 OR6B1O95007 311 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 PDGFBP01127 241 aaPredicted RBP10.83□□□□□ -0.68
VPS4A-201ENST00000254950 PTNP21246 168 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 SLC5A2P31639 672 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 WNT3P56703 355 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 MEP1AQ16819 746 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 MICAQ29983 383 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 TRMT12Q53H54 448 aaKnown RBP10.83□□□□□ -0.68
VPS4A-201ENST00000254950 FAM69BQ5VUD6 431 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 NANOGNBQ7Z5D8 188 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 VRK2Q86Y07 508 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 TMEM102Q8N9M5 508 aaPredicted RBP10.83□□□□□ -0.68
VPS4A-201ENST00000254950 TOR1AIP2Q8NFQ8 470 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 SLC41A3Q96GZ6 507 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 OR1F2PQ96R84 312 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 ADOQ96SZ5 270 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 NMNAT1Q9HAN9 279 aaPredicted RBP10.83□□□□□ -0.68
VPS4A-201ENST00000254950 WASHC1A8K0Z3 465 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 SSTR4P31391 388 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 ZNF41P51814 821 aaPredicted RBP10.83□□□□□ -0.68
VPS4A-201ENST00000254950 CRISP1P54107 249 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 C21orf58P58505 322 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 RELAQ04206 551 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 COX10Q12887 443 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 KLHL22Q53GT1 634 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 ALG10BQ5I7T1 473 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 PRR22Q8IZ63 422 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 HS3ST5Q8IZT8 346 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 AMER3Q8N944 861 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 DGCR14Q96DF8 476 aaKnown RBP10.83□□□□□ -0.68
VPS4A-201ENST00000254950 SLC46A1Q96NT5 459 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 FOLH1BQ9HBA9 442 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 TMEM9BQ9NQ34 198 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 DUSP22Q9NRW4 184 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.83□□□□□ -0.68
VPS4A-201ENST00000254950 SPIN1Q9Y657 262 aaPredicted RBP10.83□□□□□ -0.68
VPS4A-201ENST00000254950 TNFSF14O43557 240 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 ZFAND5O76080 213 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 SLC6A6P31641 620 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 ANGPT1Q15389 498 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 ELAVL1Q15717 326 aaKnown RBP10.83□□□□□ -0.68
VPS4A-201ENST00000254950 SLC27A4Q6P1M0 643 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 FAM220AQ7Z4H9 259 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 BPHLQ86WA6 291 aaPredicted RBP10.83□□□□□ -0.68
VPS4A-201ENST00000254950 GOT1L1Q8NHS2 421 aaPredicted RBP10.83□□□□□ -0.68
VPS4A-201ENST00000254950 SMPDL3BQ92485 455 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 RELTQ969Z4 430 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 ZHX1-C8orf76Q96EF9 292 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 ZNF597Q96LX8 424 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 CSF3RQ99062 836 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 EDEM2Q9BV94 578 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 EVA1AQ9H8M9 152 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 FAM60AQ9NP50 221 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 C2orf42Q9NWW7 574 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms