RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 MAFFQ9ULX9 164 aa20■□□□□ 0.79
TRIM28-201ENST00000253024 A0A0A6YYD5 115 aa19.99■□□□□ 0.79
TRIM28-201ENST00000253024 MEIOCA2RUB1 952 aa19.99■□□□□ 0.79
TRIM28-201ENST00000253024 ZIC2O95409 532 aaPredicted RBP19.99■□□□□ 0.79
TRIM28-201ENST00000253024 DPTQ07507 201 aa19.99■□□□□ 0.79
TRIM28-201ENST00000253024 TGM3Q08188 693 aa19.99■□□□□ 0.79
TRIM28-201ENST00000253024 DEFB134Q4QY38 66 aa19.99■□□□□ 0.79
TRIM28-201ENST00000253024 SLC27A4Q6P1M0 643 aa19.99■□□□□ 0.79
TRIM28-201ENST00000253024 PLEKHM3Q6ZWE6 761 aa19.99■□□□□ 0.79
TRIM28-201ENST00000253024 RAB43Q86YS6 212 aa19.99■□□□□ 0.79
TRIM28-201ENST00000253024 KLBQ86Z14 1044 aa19.99■□□□□ 0.79
TRIM28-201ENST00000253024 SFTPA2Q8IWL1 248 aa19.99■□□□□ 0.79
TRIM28-201ENST00000253024 MS4A6EQ96DS6 147 aa19.99■□□□□ 0.79
TRIM28-201ENST00000253024 RPP25Q9BUL9 199 aaKnown RBP19.99■□□□□ 0.79
TRIM28-201ENST00000253024 KATNB1Q9BVA0 655 aa19.99■□□□□ 0.79
TRIM28-201ENST00000253024 SRRQ9GZT4 340 aa19.99■□□□□ 0.79
TRIM28-201ENST00000253024 PLEKHB1Q9UF11 243 aaPredicted RBP19.99■□□□□ 0.79
TRIM28-201ENST00000253024 CSF3P09919 207 aa19.99■□□□□ 0.79
TRIM28-201ENST00000253024 PRG2P13727 222 aa19.99■□□□□ 0.79
TRIM28-201ENST00000253024 ZFP69Q49AA0 526 aa19.99■□□□□ 0.79
TRIM28-201ENST00000253024 TJAP1Q5JTD0 557 aa19.99■□□□□ 0.79
TRIM28-201ENST00000253024 C19orf48Q6RUI8 117 aa19.99■□□□□ 0.79
TRIM28-201ENST00000253024 OR6F1Q8NGZ6 308 aa19.99■□□□□ 0.79
TRIM28-201ENST00000253024 CDS1Q92903 461 aa19.99■□□□□ 0.79
TRIM28-201ENST00000253024 RELTQ969Z4 430 aa19.99■□□□□ 0.79
TRIM28-201ENST00000253024 QRFPRQ96P65 431 aa19.99■□□□□ 0.79
TRIM28-201ENST00000253024 ENKD1Q9H0I2 346 aa19.99■□□□□ 0.79
TRIM28-201ENST00000253024 ISG20L2Q9H9L3 353 aaKnown RBP19.99■□□□□ 0.79
TRIM28-201ENST00000253024 NDRG2Q9UN36 371 aaKnown RBP19.99■□□□□ 0.79
TRIM28-201ENST00000253024 BRWD1Q9NSI6 2320 aa19.99■□□□□ 0.79
TRIM28-201ENST00000253024 MAGEB4O15481 346 aaPredicted RBP19.98■□□□□ 0.79
TRIM28-201ENST00000253024 PSKH1P11801 424 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 SMSP52788 366 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 IL18Q14116 193 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 KIAA1211LQ6NV74 962 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 TRIM69Q86WT6 500 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 OR4Q3Q8NH05 313 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 OTUB2Q96DC9 234 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 COX14Q96I36 57 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 C11orf49Q9H6J7 331 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 POLMQ9NP87 494 aaPredicted RBP19.98■□□□□ 0.79
TRIM28-201ENST00000253024 ADAP2Q9NPF8 381 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 FBXO34Q9NWN3 711 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 ZFR2Q9UPR6 939 aaKnown RBP19.98■□□□□ 0.79
TRIM28-201ENST00000253024 REM1O75628 298 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 KAT7O95251 611 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 LGI1O95970 557 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 KHKP50053 298 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 WNT4P56705 351 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 ELOAQ14241 798 aaKnown RBP19.98■□□□□ 0.79
TRIM28-201ENST00000253024 AGERQ15109 404 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 CCDC92Q53HC0 331 aaPredicted RBP19.98■□□□□ 0.79
TRIM28-201ENST00000253024 C1QTNF12Q5T7M4 302 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 MARCH9Q86YJ5 346 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 KCTD7Q96MP8 289 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 SECISBP2Q96T21 854 aaKnown RBP19.98■□□□□ 0.79
TRIM28-201ENST00000253024 DDX31Q9H8H2 851 aaKnown RBP19.98■□□□□ 0.79
TRIM28-201ENST00000253024 CHST2Q9Y4C5 530 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 TBC1D3DA0A087WVF3 549 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 TBC1D3IA0A087WXS9 549 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 TBC1D3EA0A087X179 549 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 TBC1D3KA0A087X1G2 549 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 A0A1W2PRQ8 180 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 TBC1D3FA6NER0 549 aaPredicted RBP19.98■□□□□ 0.79
TRIM28-201ENST00000253024 TBC1D3LB9A6J9 549 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 CDC42EP2O14613 210 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 NFATC1O95644 943 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 TBC1D3HP0C7X1 549 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 ATP5A1P25705 553 aaKnown RBP19.98■□□□□ 0.79
TRIM28-201ENST00000253024 RAB28P51157 221 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 ENTPD8Q5MY95 495 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 TBC1D3GQ6DHY5 549 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 TBC1D3CQ6IPX1 549 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 TBC1D3Q8IZP1 549 aaPredicted RBP19.98■□□□□ 0.79
TRIM28-201ENST00000253024 WFIKKN2Q8TEU8 576 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 SAMD8Q96LT4 415 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 CTRCQ99895 268 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 ATP13A2Q9NQ11 1180 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 WASH6PQ9NQA3 447 aa19.98■□□□□ 0.79
TRIM28-201ENST00000253024 COL4A3Q01955 1670 aa19.97■□□□□ 0.79
TRIM28-201ENST00000253024 LINC01553A4QN01 128 aa19.97■□□□□ 0.79
TRIM28-201ENST00000253024 GYPBP06028 91 aa19.97■□□□□ 0.79
TRIM28-201ENST00000253024 RPS7P62081 194 aaKnown RBP19.97■□□□□ 0.79
TRIM28-201ENST00000253024 HYAL2Q12891 473 aa19.97■□□□□ 0.79
TRIM28-201ENST00000253024 MLLT11Q13015 90 aaPredicted RBP19.97■□□□□ 0.79
TRIM28-201ENST00000253024 CST6Q15828 149 aa19.97■□□□□ 0.79
TRIM28-201ENST00000253024 AGBL4Q5VU57 503 aa19.97■□□□□ 0.79
TRIM28-201ENST00000253024 ZNF761Q86XN6 746 aaPredicted RBP19.97■□□□□ 0.79
TRIM28-201ENST00000253024 UBQLNLQ8IYU4 475 aa19.97■□□□□ 0.79
TRIM28-201ENST00000253024 SLC25A46Q96AG3 418 aa19.97■□□□□ 0.79
TRIM28-201ENST00000253024 FAIM2Q9BWQ8 316 aa19.97■□□□□ 0.79
TRIM28-201ENST00000253024 MKRN2Q9H000 416 aaKnown RBP19.97■□□□□ 0.79
TRIM28-201ENST00000253024 SLC38A1Q9H2H9 487 aa19.97■□□□□ 0.79
TRIM28-201ENST00000253024 HOXC11O43248 304 aaPredicted RBP19.97■□□□□ 0.79
TRIM28-201ENST00000253024 LDB3O75112 727 aa19.97■□□□□ 0.79
TRIM28-201ENST00000253024 RPN2P04844 631 aa19.97■□□□□ 0.79
TRIM28-201ENST00000253024 LIMS3P0CW19 117 aa19.97■□□□□ 0.79
TRIM28-201ENST00000253024 LIMS4P0CW20 117 aa19.97■□□□□ 0.79
TRIM28-201ENST00000253024 CTBP2P56545 445 aa19.97■□□□□ 0.79
TRIM28-201ENST00000253024 SGCGQ13326 291 aa19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms