RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 ITGB8P26012 769 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 GABRA5P31644 462 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 RORAP35398 523 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 EIF1P41567 113 aaKnown RBP13.84□□□□□ -0.19
PTPRA-201ENST00000216877 RPS26P62854 115 aaKnown RBP13.84□□□□□ -0.19
PTPRA-201ENST00000216877 MAP4K2Q12851 820 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 SERPINA13PQ6UXR4 307 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 FGD2Q7Z6J4 655 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 CFAP52Q8N1V2 620 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 OR52B4Q8NGK2 314 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 OR1S1Q8NH92 325 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 OR14A16Q8NHC5 309 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 ZFP42Q96MM3 310 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 SEC14L3Q9UDX4 400 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 CCL27Q9Y4X3 112 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 AGAP14A8MT82 685 aa13.83□□□□□ -0.2
PTPRA-201ENST00000216877 CXCL11O14625 94 aa13.83□□□□□ -0.2
PTPRA-201ENST00000216877 TAPBPO15533 448 aa13.83□□□□□ -0.2
PTPRA-201ENST00000216877 PRAMEF2O60811 474 aa13.83□□□□□ -0.2
PTPRA-201ENST00000216877 PTBP1P26599 531 aaKnown RBP eCLIP13.83□□□□□ -0.25e-7■■■■□ 19.7
PTPRA-201ENST00000216877 SEC61A1P61619 476 aaKnown RBP13.83□□□□□ -0.2
PTPRA-201ENST00000216877 SRSF11Q05519 484 aaKnown RBP13.83□□□□□ -0.2
PTPRA-201ENST00000216877 PCBP2Q15366 365 aaKnown RBP eCLIP13.83□□□□□ -0.22e-6■■■□□ 19.1
PTPRA-201ENST00000216877 CTSL3PQ5NE16 218 aa13.83□□□□□ -0.2
PTPRA-201ENST00000216877 KIAA1211LQ6NV74 962 aa13.83□□□□□ -0.2
PTPRA-201ENST00000216877 TNFAIP8L2Q6P589 184 aaPredicted RBP13.83□□□□□ -0.2
PTPRA-201ENST00000216877 HSD17B13Q7Z5P4 300 aaPredicted RBP13.83□□□□□ -0.2
PTPRA-201ENST00000216877 TSEN54Q7Z6J9 526 aaKnown RBP13.83□□□□□ -0.2
PTPRA-201ENST00000216877 PUSL1Q8N0Z8 303 aaKnown RBP13.83□□□□□ -0.2
PTPRA-201ENST00000216877 MNTQ99583 582 aa13.83□□□□□ -0.2
PTPRA-201ENST00000216877 TGIF2Q9GZN2 237 aa13.83□□□□□ -0.2
PTPRA-201ENST00000216877 R3HDMLQ9H3Y0 253 aa13.83□□□□□ -0.2
PTPRA-201ENST00000216877 FTSJ1Q9UET6 329 aa13.83□□□□□ -0.2
PTPRA-201ENST00000216877 HS3ST4Q9Y661 456 aa13.83□□□□□ -0.2
PTPRA-201ENST00000216877 CCDC88CQ9P219 2028 aa13.83□□□□□ -0.2
PTPRA-201ENST00000216877 UBE2QL1A1L167 161 aa13.83□□□□□ -0.2
PTPRA-201ENST00000216877 PPP3CBP16298 524 aa13.83□□□□□ -0.2
PTPRA-201ENST00000216877 CTPS1P17812 591 aa13.83□□□□□ -0.2
PTPRA-201ENST00000216877 EPORP19235 508 aa13.83□□□□□ -0.2
PTPRA-201ENST00000216877 LPOP22079 712 aaPredicted RBP13.83□□□□□ -0.2
PTPRA-201ENST00000216877 ALKBH1Q13686 389 aaKnown RBP13.83□□□□□ -0.2
PTPRA-201ENST00000216877 VEZF1Q14119 521 aa13.83□□□□□ -0.2
PTPRA-201ENST00000216877 METTL11BQ5VVY1 283 aa13.83□□□□□ -0.2
PTPRA-201ENST00000216877 NAA40Q86UY6 237 aa13.83□□□□□ -0.2
PTPRA-201ENST00000216877 LSRQ86X29 649 aaPredicted RBP13.83□□□□□ -0.2
PTPRA-201ENST00000216877 LRRC28Q86X40 367 aaPredicted RBP13.83□□□□□ -0.2
PTPRA-201ENST00000216877 DNAJB3Q8WWF6 145 aa13.83□□□□□ -0.2
PTPRA-201ENST00000216877 SLC35A5Q9BS91 424 aa13.83□□□□□ -0.2
PTPRA-201ENST00000216877 SPATA5L1Q9BVQ7 753 aa13.83□□□□□ -0.2
PTPRA-201ENST00000216877 IFT27Q9BW83 186 aa13.83□□□□□ -0.2
PTPRA-201ENST00000216877 ATP13A1Q9HD20 1204 aa13.83□□□□□ -0.2
PTPRA-201ENST00000216877 POT1Q9NUX5 634 aa13.83□□□□□ -0.2
PTPRA-201ENST00000216877 WRBO00258 174 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 SULT1C2O00338 296 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 OIP5O43482 229 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 SELLP14151 372 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 SNRPBP14678 240 aaKnown RBP13.82□□□□□ -0.2
PTPRA-201ENST00000216877 HSD17B2P37059 387 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 GAB1Q13480 694 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 NAE1Q13564 534 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 SNTB1Q13884 538 aaKnown RBP13.82□□□□□ -0.2
PTPRA-201ENST00000216877 RPS26P11Q5JNZ5 115 aaPredicted RBP13.82□□□□□ -0.2
PTPRA-201ENST00000216877 MANEAQ5SRI9 462 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 HECTD3Q5T447 861 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 LAS2Q8IYD9 372 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 SVBPQ8N300 66 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 HUS1BQ8NHY5 278 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 BBS10Q8TAM1 723 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 SLC6A18Q96N87 628 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 CINPQ9BW66 212 aaPredicted RBP13.82□□□□□ -0.2
PTPRA-201ENST00000216877 ANKRD19PQ9H560 264 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 AUNIPQ9H7T9 357 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 ST3GAL5Q9UNP4 418 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 KLF2Q9Y5W3 355 aaPredicted RBP13.82□□□□□ -0.2
PTPRA-201ENST00000216877 ARID2Q68CP9 1835 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 SOWAHBA6NEL2 793 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 C1orf196B1AJZ1 125 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 SUSD5O60279 629 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 GREM1O60565 184 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 MMP2P08253 660 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 PAICSP22234 425 aaKnown RBP13.82□□□□□ -0.2
PTPRA-201ENST00000216877 AKR1C3P42330 323 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 MTNR1AP48039 350 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 EFEMP1Q12805 493 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 OR5M3Q8NGP4 307 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 SPRYD4Q8WW59 207 aaPredicted RBP13.82□□□□□ -0.2
PTPRA-201ENST00000216877 ACOT12Q8WYK0 555 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 S100PBPQ96BU1 408 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 ZNF275Q9NSD4 429 aaPredicted RBP13.82□□□□□ -0.2
PTPRA-201ENST00000216877 ENPP4Q9Y6X5 453 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 HTTP42858 3142 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 IGKV6D-21A0A0A0MT36 114 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 TUBAL3A6NHL2 446 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 SCAMP1O15126 338 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 ANXA4P09525 319 aaPredicted RBP13.82□□□□□ -0.2
PTPRA-201ENST00000216877 DRD2P14416 443 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 GJA5P36382 358 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 SORDQ00796 357 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 IRF8Q02556 426 aa13.82□□□□□ -0.2
PTPRA-201ENST00000216877 IL10RBQ08334 325 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms