RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 SMAP2Q8WU79 429 aaPredicted RBP13.17□□□□□ -0.3
USH1C-201ENST00000005226 ARRDC3Q96B67 414 aa13.17□□□□□ -0.3
USH1C-201ENST00000005226 PRRC1Q96M27 445 aa13.17□□□□□ -0.3
USH1C-201ENST00000005226 AIF1LQ9BQI0 150 aa13.17□□□□□ -0.3
USH1C-201ENST00000005226 DENND4CQ5VZ89 1909 aa13.17□□□□□ -0.3
USH1C-201ENST00000005226 TRAV6A0A075B6T7 132 aa13.17□□□□□ -0.3
USH1C-201ENST00000005226 TSPAN11A1L157 253 aa13.17□□□□□ -0.3
USH1C-201ENST00000005226 ICMTO60725 284 aa13.17□□□□□ -0.3
USH1C-201ENST00000005226 SYPP08247 313 aa13.17□□□□□ -0.3
USH1C-201ENST00000005226 SSR2P43308 183 aa13.17□□□□□ -0.3
USH1C-201ENST00000005226 CD200R1LQ6Q8B3 271 aa13.17□□□□□ -0.3
USH1C-201ENST00000005226 TMEM107Q6UX40 140 aa13.17□□□□□ -0.3
USH1C-201ENST00000005226 NUDT13Q86X67 352 aa13.17□□□□□ -0.3
USH1C-201ENST00000005226 DOK4Q8TEW6 326 aa13.17□□□□□ -0.3
USH1C-201ENST00000005226 PCNPQ8WW12 178 aaKnown RBP13.17□□□□□ -0.3
USH1C-201ENST00000005226 KIAA1143Q96AT1 154 aaPredicted RBP13.17□□□□□ -0.3
USH1C-201ENST00000005226 VWCEQ96DN2 955 aa13.17□□□□□ -0.3
USH1C-201ENST00000005226 BBS4Q96RK4 519 aa13.17□□□□□ -0.3
USH1C-201ENST00000005226 POLMQ9NP87 494 aaPredicted RBP13.17□□□□□ -0.3
USH1C-201ENST00000005226 ING3Q9NXR8 418 aa13.17□□□□□ -0.3
USH1C-201ENST00000005226 NFKBIL1Q9UBC1 381 aaPredicted RBP13.17□□□□□ -0.3
USH1C-201ENST00000005226 CLEC4AQ9UMR7 237 aa13.17□□□□□ -0.3
USH1C-201ENST00000005226 EXOSC1Q9Y3B2 195 aaKnown RBP13.17□□□□□ -0.3
USH1C-201ENST00000005226 PCDHGB7Q9Y5F8 929 aa13.17□□□□□ -0.3
USH1C-201ENST00000005226 ZSCAN5BA6NJL1 495 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 C4orf51C9J302 202 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 MAPK9P45984 424 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 SRP9P49458 86 aaKnown RBP13.16□□□□□ -0.3
USH1C-201ENST00000005226 CLDN2P57739 230 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 GPR176Q14439 515 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 FCN2Q15485 313 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 RRM2BQ7LG56 351 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 AMIGO1Q86WK6 493 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 C12orf40Q86WS4 652 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 OR51G2Q8NGK0 314 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 OR2L2Q8NH16 312 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 ING5Q8WYH8 240 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 PHF21AQ96BD5 680 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 SLC38A2Q96QD8 506 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 RHBGQ9H310 441 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 SLC28A3Q9HAS3 691 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 PTGFRNQ9P2B2 879 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 LIPT1Q9Y234 373 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 IRAK3Q9Y616 596 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 CDH10Q9Y6N8 788 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 HEATR5BQ9P2D3 2071 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 CDH23Q9H251 3354 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 A0A1W2PQ72 361 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 LILRB3O75022 631 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 CXCL14O95715 111 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 CRYZL1O95825 349 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 CXCL10P02778 98 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 TBXA2RP21731 343 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 KELP23276 732 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 FRKP42685 505 aaPredicted RBP13.16□□□□□ -0.3
USH1C-201ENST00000005226 TNK1Q13470 666 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 ZNF311Q5JNZ3 666 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 BCL2L15Q5TBC7 163 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 TRILQ7L0X0 811 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 OR8K5Q8NH50 307 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 HCAR2Q8TDS4 363 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 RGMAQ96B86 450 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 FCRL4Q96PJ5 515 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 ZNF649Q9BS31 505 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 MARVELD1Q9BSK0 173 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 LGR4Q9BXB1 951 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 SLC35C2Q9NQQ7 365 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 MRPS18AQ9NVS2 196 aaKnown RBP13.16□□□□□ -0.3
USH1C-201ENST00000005226 CHST2Q9Y4C5 530 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 COL4A3Q01955 1670 aa13.16□□□□□ -0.3
USH1C-201ENST00000005226 LRRK1Q38SD2 2015 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 KDM4EB2RXH2 506 aaPredicted RBP13.15□□□□□ -0.3
USH1C-201ENST00000005226 SCAMP1O15126 338 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 FABP7O15540 132 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 FCMRO60667 390 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 MOSPD3O75425 235 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 HLA-DQB1P01920 261 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 SHC1P29353 583 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 AHRP35869 848 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 CCR8P51685 355 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 OR10A3P58181 314 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 FZD5Q13467 585 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 NDUFA9Q16795 377 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 EOGTQ5NDL2 527 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 AADACL4Q5VUY2 407 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 C18orf63Q68DL7 685 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 OR4C11Q6IEV9 310 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 CPOQ8IVL8 374 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 SIRT6Q8N6T7 355 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 GNPDA2Q8TDQ7 276 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 NXPE3Q969Y0 559 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 CLIP3Q96DZ5 547 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 EPHX3Q9H6B9 360 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 C11orf49Q9H6J7 331 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 MAT2BQ9NZL9 334 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 XIRP2A4UGR9 3374 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 A0A0A6YYJ9 748 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 SYNDIG1LA6NDD5 238 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 PROM1O43490 865 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 ORC5O43913 435 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms