RNA–Protein interactions for RNA: ENST00000641939.1

PHGDH-231, Transcript of phosphoglycerate dehydrogenase, human

Gene PHGDH, Length 540 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-231	ENST00000641939	ANKRD26P1	Q6NSI1	321 aa		13.77	□□□□□ -0.21
PHGDH-231	ENST00000641939	XKRX	Q6PP77	449 aa		13.77	□□□□□ -0.21
PHGDH-231	ENST00000641939	NPSR1	Q6W5P4	371 aa		13.77	□□□□□ -0.21
PHGDH-231	ENST00000641939	R3HCC1L	Q7Z5L2	792 aa	Known RBP	13.77	□□□□□ -0.21
PHGDH-231	ENST00000641939	OR2L13	Q8N349	312 aa		13.77	□□□□□ -0.21
PHGDH-231	ENST00000641939	CLHC1	Q8NHS4	586 aa		13.77	□□□□□ -0.21
PHGDH-231	ENST00000641939	MED12	Q93074	2177 aa		13.77	□□□□□ -0.21
PHGDH-231	ENST00000641939	TMBIM1	Q969X1	311 aa		13.77	□□□□□ -0.21
PHGDH-231	ENST00000641939	PPCDC	Q96CD2	204 aa		13.77	□□□□□ -0.21
PHGDH-231	ENST00000641939	NTNG2	Q96CW9	530 aa		13.77	□□□□□ -0.21
PHGDH-231	ENST00000641939	ELP4	Q96EB1	424 aa		13.77	□□□□□ -0.21
PHGDH-231	ENST00000641939	TMEM41A	Q96HV5	264 aa		13.77	□□□□□ -0.21
PHGDH-231	ENST00000641939	C3orf30	Q96M34	536 aa		13.77	□□□□□ -0.21
PHGDH-231	ENST00000641939	COL21A1	Q96P44	957 aa		13.77	□□□□□ -0.21
PHGDH-231	ENST00000641939	NODAL	Q96S42	347 aa		13.77	□□□□□ -0.21
PHGDH-231	ENST00000641939	DMRTA2	Q96SC8	542 aa		13.77	□□□□□ -0.21
PHGDH-231	ENST00000641939	TP63	Q9H3D4	680 aa	Predicted RBP	13.77	□□□□□ -0.21
PHGDH-231	ENST00000641939	EXO5	Q9H790	373 aa		13.77	□□□□□ -0.21
PHGDH-231	ENST00000641939	ACKR4	Q9NPB9	350 aa		13.77	□□□□□ -0.21
PHGDH-231	ENST00000641939	DDX18	Q9NVP1	670 aa	Known RBP	13.77	□□□□□ -0.21
PHGDH-231	ENST00000641939	GIMAP2	Q9UG22	337 aa		13.77	□□□□□ -0.21
PHGDH-231	ENST00000641939	HRH3	Q9Y5N1	445 aa		13.77	□□□□□ -0.21
PHGDH-231	ENST00000641939	UPK1A	O00322	258 aa		13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	ABCB7	O75027	752 aa		13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	REM1	O75628	298 aa		13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	SNUPN	O95149	360 aa	Known RBP	13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	PSMG1	O95456	288 aa		13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	GRK2	P25098	689 aa		13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	KRT20	P35900	424 aa		13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	HPCAL1	P37235	193 aa		13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	HSPB3	Q12988	150 aa		13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	GXYLT1	Q4G148	440 aa		13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	ZNF385B	Q569K4	471 aa		13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	C6orf136	Q5SQH8	315 aa		13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	FNDC7	Q5VTL7	733 aa		13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	TIGD3	Q6B0B8	471 aa		13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	DESI1	Q6ICB0	168 aa		13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	SLC30A6	Q6NXT4	461 aa		13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	NCCRP1	Q6ZVX7	275 aa	Predicted RBP	13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	ZNF551	Q7Z340	670 aa	Predicted RBP	13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	SLC44A2	Q8IWA5	706 aa	Predicted RBP	13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	LIX1	Q8N485	282 aa		13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	OR5M9	Q8NGP3	310 aa		13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	ZFP28	Q8NHY6	868 aa		13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	CIDEC	Q96AQ7	238 aa	Predicted RBP	13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	SARAF	Q96BY9	339 aa		13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	TMCO6	Q96DC7	493 aa		13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	MTERF3	Q96E29	417 aa		13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	ZBED6CL	Q96FA7	236 aa	Predicted RBP	13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	SLC35A4	Q96G79	324 aa		13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	ADO	Q96SZ5	270 aa		13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	OSBPL11	Q9BXB4	747 aa		13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	ZNF395	Q9H8N7	513 aa	Predicted RBP	13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	PNPLA3	Q9NST1	481 aa		13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	KLRF1	Q9NZS2	232 aa		13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	SH3BP4	Q9P0V3	963 aa		13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	RAP2C	Q9Y3L5	183 aa		13.76	□□□□□ -0.21
PHGDH-231	ENST00000641939	PRAMEF25	A6NGN4	478 aa		13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	PRSS44	E7EML9	344 aa		13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	GNB5	O14775	395 aa		13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	TSPAN2	O60636	221 aa		13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	ICOSLG	O75144	302 aa		13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	PRPS2	P11908	318 aa		13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	DDX5	P17844	614 aa	Known RBP	13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	BGN	P21810	368 aa		13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	ELAVL4	P26378	380 aa	Known RBP	13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	IL12B	P29460	328 aa		13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	RPL3	P39023	403 aa	Known RBP	13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	DCT	P40126	519 aa		13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	FRK	P42685	505 aa	Predicted RBP	13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	SLC1A6	P48664	564 aa		13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	MANF	P55145	182 aa	Known RBP	13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	PSG6	Q00889	435 aa		13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	EFR3A	Q14156	821 aa		13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	ZNHIT3	Q15649	155 aa	Predicted RBP	13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	HHAT	Q5VTY9	493 aa		13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	TMEM211	Q6ICI0	200 aa		13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	ANGPTL8	Q6UXH0	198 aa		13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	LARP4	Q71RC2	724 aa	Known RBP eCLIP	13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	ZNF781	Q8N8C0	355 aa		13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	FNDC5	Q8NAU1	212 aa		13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	OR1J4	Q8NGS1	313 aa		13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	TUBGCP3	Q96CW5	907 aa		13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	GNRHR2	Q96P88	292 aa		13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	PAIP2	Q9BPZ3	127 aa	Known RBP	13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	C1orf50	Q9BV19	199 aa		13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	C20orf27	Q9GZN8	174 aa		13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	SLC6A15	Q9H2J7	730 aa		13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	UBQLN3	Q9H347	655 aa		13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	ACSS1	Q9NUB1	689 aa	Predicted RBP	13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	TNFRSF10D	Q9UBN6	386 aa		13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	ACAD8	Q9UKU7	415 aa		13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	C15orf41	Q9Y2V0	281 aa		13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	OR10H1	Q9Y4A9	318 aa		13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	KLF2	Q9Y5W3	355 aa	Predicted RBP	13.75	□□□□□ -0.21
PHGDH-231	ENST00000641939	INTS1	Q8N201	2190 aa	Known RBP	13.74	□□□□□ -0.21
PHGDH-231	ENST00000641939	FIGNL2	A6NMB9	653 aa		13.74	□□□□□ -0.21
PHGDH-231	ENST00000641939	SNPH	O15079	494 aa		13.74	□□□□□ -0.21
PHGDH-231	ENST00000641939	SCAMP2	O15127	329 aa	Known RBP	13.74	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms