RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 ICAM1P05362 532 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 PROZP22891 400 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 ITPKAP23677 461 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 PEX2P28328 305 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 HOXA10P31260 410 aaPredicted RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 PRKCIP41743 596 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 FLT3LGP49771 235 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 NUTF2P61970 127 aaKnown RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 HBA1P69905 142 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 PEA15Q15121 130 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 PFKFB4Q16877 469 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 C21orf62-AS1Q17RA5 79 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 CDONQ4KMG0 1287 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 AVPI1Q5T686 147 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 ENPP7Q6UWV6 458 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 PGAP1Q75T13 922 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 LRRTM4Q86VH4 590 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 UEVLDQ8IX04 471 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 ADGRF4Q8IZF3 695 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 RCBTB1Q8NDN9 531 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 GSTCDQ8NEC7 633 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 COQ8BQ96D53 544 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 RTFDC1Q9BY42 306 aaPredicted RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 UNC93B1Q9H1C4 597 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 LRRN3Q9H3W5 708 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 TCF7L1Q9HCS4 588 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 TMEM9BQ9NQ34 198 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 BARHL2Q9NY43 387 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 MGAT4BQ9UQ53 548 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 FCF1Q9Y324 198 aaKnown RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 CMAHPQ9Y471 501 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 MUC6Q6W4X9 2439 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 SHPRHQ149N8 1683 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 A0A0G2JN53 185 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 LOC101059915A0A1B0GWI6 518 aaPredicted RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 PRAMEF27A3QJZ7 478 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 ANKRD30BLA7E2S9 258 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 PHYHO14832 338 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 MITFO75030 526 aaPredicted RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 TOX4O94842 621 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 DNASE1P24855 282 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 AGTR1P30556 359 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 MAT2AP31153 395 aaKnown RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 GGT2P36268 569 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 IDH3GP51553 393 aaPredicted RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 CCL23P55773 120 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 PRPS1P60891 318 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 RAB11AP62491 216 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 MXD1Q05195 221 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 EIF4HQ15056 248 aaKnown RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 C3orf38Q5JPI3 329 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 PPP1R26Q5T8A7 1209 aaPredicted RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 SLC27A4Q6P1M0 643 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 TMEM71Q6P5X7 295 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 RFWD3Q6PCD5 774 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 FAM124AQ86V42 546 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 GPR65Q8IYL9 337 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 HS3ST5Q8IZT8 346 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 CLIP4Q8N3C7 705 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 CBR4Q8N4T8 237 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 HMGB4Q8WW32 186 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 NCSTNQ92542 709 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 LMLNQ96KR4 655 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 BTN2A3PQ96KV6 586 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 C7orf34Q96L11 122 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 CHRDL1Q9BU40 450 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 CACNG6Q9BXT2 260 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 DCSTAMPQ9H295 470 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 EBF3Q9H4W6 596 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 LRRC19Q9H756 370 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 WASH6PQ9NQA3 447 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 SLC22A11Q9NSA0 550 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 EGFL7Q9UHF1 273 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 CD207Q9UJ71 328 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 PIGLQ9Y2B2 252 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 BOLA1Q9Y3E2 137 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 ADAMTS12P58397 1594 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 A0A1W2PPC1 479 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 A0A1W2PRB8 838 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 PRR33A8MZF0 331 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 PRSS44E7EML9 344 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 ARVCFO00192 962 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 LILRB5O75023 590 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 DEDDO75618 318 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 SPAM1P38567 509 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 CD151P48509 253 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 C1QTNF8P60827 252 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 SNRPD2P62316 118 aaKnown RBP2.65□□□□□ -1.98
SCN1A-219ENST00000641575 TMEM62Q0P6H9 643 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF155Q12901 538 aaPredicted RBP2.65□□□□□ -1.98
SCN1A-219ENST00000641575 SERINC3Q13530 473 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 NPTX1Q15818 432 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 MTHFSDQ2M296 383 aaKnown RBP2.65□□□□□ -1.98
SCN1A-219ENST00000641575 DPY19L1Q2PZI1 675 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 TMEM41BQ5BJD5 291 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 CPTPQ5TA50 214 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 SPOCD1Q6ZMY3 1216 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 ASCL5Q7RTU5 278 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 AGBL5Q8NDL9 886 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 OR13C9Q8NGT0 318 aa2.65□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms