RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 TMEM35AQ53FP2 167 aa3.76□□□□□ -1.81
SCN1A-214ENST00000637038 EIPR1Q53HC9 387 aa3.76□□□□□ -1.81
SCN1A-214ENST00000637038 ARSIQ5FYB1 569 aa3.76□□□□□ -1.81
SCN1A-214ENST00000637038 HENMT1Q5T8I9 393 aaKnown RBP3.76□□□□□ -1.81
SCN1A-214ENST00000637038 PRAMEF8Q5VWM4 474 aa3.76□□□□□ -1.81
SCN1A-214ENST00000637038 FAM46CQ5VWP2 391 aa3.76□□□□□ -1.81
SCN1A-214ENST00000637038 KHDRBS2Q5VWX1 349 aaKnown RBP3.76□□□□□ -1.81
SCN1A-214ENST00000637038 PRAMEF7Q5VXH5 474 aa3.76□□□□□ -1.81
SCN1A-214ENST00000637038 LIPKQ5VXJ0 399 aa3.76□□□□□ -1.81
SCN1A-214ENST00000637038 C12orf73Q69YU5 71 aa3.76□□□□□ -1.81
SCN1A-214ENST00000637038 ZNF730Q6ZMV8 503 aa3.76□□□□□ -1.81
SCN1A-214ENST00000637038 FAM83HQ6ZRV2 1179 aaPredicted RBP3.76□□□□□ -1.81
SCN1A-214ENST00000637038 HDDC2Q7Z4H3 204 aa3.76□□□□□ -1.81
SCN1A-214ENST00000637038 C6orf120Q7Z4R8 191 aa3.76□□□□□ -1.81
SCN1A-214ENST00000637038 HSD11B1LQ7Z5J1 315 aa3.76□□□□□ -1.81
SCN1A-214ENST00000637038 CDK20Q8IZL9 346 aa3.76□□□□□ -1.81
SCN1A-214ENST00000637038 SLC39A11Q8N1S5 342 aa3.76□□□□□ -1.81
SCN1A-214ENST00000637038 GPR151Q8TDV0 419 aa3.76□□□□□ -1.81
SCN1A-214ENST00000637038 CXorf40AQ8TE69 158 aa3.76□□□□□ -1.81
SCN1A-214ENST00000637038 BCL7CQ8WUZ0 217 aaPredicted RBP3.76□□□□□ -1.81
SCN1A-214ENST00000637038 ZNF480Q8WV37 535 aa3.76□□□□□ -1.81
SCN1A-214ENST00000637038 SLC25A46Q96AG3 418 aa3.76□□□□□ -1.81
SCN1A-214ENST00000637038 RNFT2Q96EX2 444 aa3.76□□□□□ -1.81
SCN1A-214ENST00000637038 OR5M11Q96RB7 305 aa3.76□□□□□ -1.81
SCN1A-214ENST00000637038 UQCC2Q9BRT2 126 aa3.76□□□□□ -1.81
SCN1A-214ENST00000637038 SGPP1Q9BX95 441 aa3.76□□□□□ -1.81
SCN1A-214ENST00000637038 IL17BQ9UHF5 180 aa3.76□□□□□ -1.81
SCN1A-214ENST00000637038 SLCO3A1Q9UIG8 710 aa3.76□□□□□ -1.81
SCN1A-214ENST00000637038 KCND3Q9UK17 655 aa3.76□□□□□ -1.81
SCN1A-214ENST00000637038 ACSL6Q9UKU0 697 aa3.76□□□□□ -1.81
SCN1A-214ENST00000637038 TMA7Q9Y2S6 64 aaKnown RBP3.76□□□□□ -1.81
SCN1A-214ENST00000637038 CFAP20Q9Y6A4 193 aaKnown RBP3.76□□□□□ -1.81
SCN1A-214ENST00000637038 A0A087WV48 116 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 PRAMEF33A0A0G2JMD5 474 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 A0A0G2JPF8 293 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 HNRNPCL2B2RXH8 293 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 C2CD4DB7Z1M9 353 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 HNRNPCL3B7ZW38 293 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 NDUFS4O43181 175 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 PRAMEF10O60809 474 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 CSO75390 466 aaKnown RBP3.75□□□□□ -1.81
SCN1A-214ENST00000637038 LEFTY1O75610 366 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 GPX5O75715 221 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 SOX14O95416 240 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 B3GALT4O96024 378 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 ADH1CP00326 375 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 GASTP01350 101 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 SLC35G4P0C7Q5 338 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 HNRNPCL4P0DMR1 293 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 ACP2P11117 423 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 GABRB1P18505 474 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 CPN2P22792 545 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 ITGB7P26010 798 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 GNALP38405 381 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 BUD31P41223 144 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-214ENST00000637038 HAAOP46952 286 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 ATP12AP54707 1039 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 PCBP3P57721 371 aaKnown RBP3.75□□□□□ -1.81
SCN1A-214ENST00000637038 TAS2R43P59537 309 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 RAE1P78406 368 aaKnown RBP3.75□□□□□ -1.81
SCN1A-214ENST00000637038 MXD1Q05195 221 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 HSPB3Q12988 150 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 WSCD2Q2TBF2 565 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 GPAT3Q53EU6 434 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 KLHL12Q53G59 568 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 EEF1AKMT2Q5JPI9 291 aaKnown RBP3.75□□□□□ -1.81
SCN1A-214ENST00000637038 COX20Q5RI15 118 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 C6orf183Q5T699 404 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 SAXO2Q658L1 398 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 PAMR1Q6UXH9 720 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 NRARPQ7Z6K4 114 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 SLC9B2Q86UD5 537 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 GID4Q8IVV7 300 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 CELF2-AS1Q8N7Q2 184 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 SPERTQ8NA61 448 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 XAGE5Q8WWM1 108 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 WBP2Q969T9 261 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 DACT3Q96B18 629 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-214ENST00000637038 EXOSC8Q96B26 276 aaKnown RBP3.75□□□□□ -1.81
SCN1A-214ENST00000637038 PRRC1Q96M27 445 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 FAM83CQ9BQN1 747 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 PINK1Q9BXM7 581 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 NRSN2Q9GZP1 204 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 OR2AG1Q9H205 316 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 ANKRD19PQ9H560 264 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 NT5DC2Q9H857 520 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 FOLH1BQ9HBA9 442 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 TIGARQ9NQ88 270 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 MED17Q9NVC6 651 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 RLIMQ9NVW2 624 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 PTTG3PQ9NZH4 202 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 PTGFRNQ9P2B2 879 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 GPR34Q9UPC5 381 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 LIPT1Q9Y234 373 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 PCDHGB7Q9Y5F8 929 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 A0A1W2PQL4 384 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-214ENST00000637038 SHISA7A6NL88 538 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 NOTOA8MTQ0 251 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 ZNF217O75362 1048 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 CYP17A1P05093 508 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms