RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 HOXB13Q92826 284 aaPredicted RBP15.7■□□□□ 0.1
CLN3-252ENST00000636907 NR1H4Q96RI1 486 aaPredicted RBP15.7■□□□□ 0.1
CLN3-252ENST00000636907 SDF2Q99470 211 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 EPYCQ99645 322 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 RBM4BQ9BQ04 359 aaKnown RBP15.7■□□□□ 0.1
CLN3-252ENST00000636907 WFDC6Q9BQY6 131 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 PELOQ9BRX2 385 aaKnown RBP15.7■□□□□ 0.1
CLN3-252ENST00000636907 CNPPD1Q9BV87 410 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 RBM4Q9BWF3 364 aaKnown RBP15.7■□□□□ 0.1
CLN3-252ENST00000636907 FOLH1BQ9HBA9 442 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 APMAPQ9HDC9 416 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 MKKSQ9NPJ1 570 aaPredicted RBP15.7■□□□□ 0.1
CLN3-252ENST00000636907 SLC22A11Q9NSA0 550 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 UBAP1Q9NZ09 502 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 ERVK-19Q9WJR5 959 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 FER1L5A0AVI2 2057 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 GPR179Q6PRD1 2367 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 IGKV3D-11A0A0A0MRZ8 115 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 CDX4O14627 284 aaPredicted RBP15.7■□□□□ 0.1
CLN3-252ENST00000636907 ADAMDEC1O15204 470 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 NKX2-2O95096 273 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 PABPC4LP0CB38 370 aaKnown RBP15.7■□□□□ 0.1
CLN3-252ENST00000636907 UBTFL6P0CB48 400 aaPredicted RBP15.7■□□□□ 0.1
CLN3-252ENST00000636907 TNNI3P19429 210 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 GABRA3P34903 492 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 PGDP52209 483 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 ARHGDIAP52565 204 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 SPIBQ01892 262 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 FUT7Q11130 342 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 TRA2AQ13595 282 aaKnown RBP eCLIP15.7■□□□□ 0.1
CLN3-252ENST00000636907 GK3PQ14409 553 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 DCST2Q5T1A1 773 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 ZNF605Q86T29 641 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 RBM45Q8IUH3 476 aaKnown RBP15.7■□□□□ 0.1
CLN3-252ENST00000636907 LACC1Q8IV20 430 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 VANGL1Q8TAA9 524 aaPredicted RBP15.7■□□□□ 0.1
CLN3-252ENST00000636907 NRBF2Q96F24 287 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 PIP5K1AQ99755 562 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 LMF2Q9BU23 707 aaKnown RBP15.7■□□□□ 0.1
CLN3-252ENST00000636907 PNO1Q9NRX1 252 aaKnown RBP15.7■□□□□ 0.1
CLN3-252ENST00000636907 CTSFQ9UBX1 484 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 MKLN1Q9UL63 735 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 SATB2Q9UPW6 733 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 WDR45Q9Y484 360 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 PCDHGB5Q9Y5G0 923 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 PCDHGB3Q9Y5G1 929 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 HEMK1Q9Y5R4 338 aaPredicted RBP15.7■□□□□ 0.1
CLN3-252ENST00000636907 LYVE1Q9Y5Y7 322 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 COL5A1P20908 1838 aaPredicted RBP15.69■□□□□ 0.1
CLN3-252ENST00000636907 GXYLT2A0PJZ3 443 aa15.69■□□□□ 0.1
CLN3-252ENST00000636907 EIF4E1BA6NMX2 242 aaKnown RBP15.69■□□□□ 0.1
CLN3-252ENST00000636907 EFCAB7A8K855 629 aa15.69■□□□□ 0.1
CLN3-252ENST00000636907 C17orf105B2RV13 164 aa15.69■□□□□ 0.1
CLN3-252ENST00000636907 ZNF806P0C7X5 589 aa15.69■□□□□ 0.1
CLN3-252ENST00000636907 RHCEP18577 417 aa15.69■□□□□ 0.1
CLN3-252ENST00000636907 CSTF2P33240 577 aaKnown RBP eCLIP15.69■□□□□ 0.1
CLN3-252ENST00000636907 NUBP1P53384 320 aa15.69■□□□□ 0.1
CLN3-252ENST00000636907 GANABQ14697 944 aaKnown RBP15.69■□□□□ 0.1
CLN3-252ENST00000636907 SLC36A3Q495N2 470 aa15.69■□□□□ 0.1
CLN3-252ENST00000636907 ZNF311Q5JNZ3 666 aa15.69■□□□□ 0.1
CLN3-252ENST00000636907 VRK2Q86Y07 508 aa15.69■□□□□ 0.1
CLN3-252ENST00000636907 PRSS58Q8IYP2 241 aa15.69■□□□□ 0.1
CLN3-252ENST00000636907 GATA6Q92908 595 aa15.69■□□□□ 0.1
CLN3-252ENST00000636907 CLIP3Q96DZ5 547 aa15.69■□□□□ 0.1
CLN3-252ENST00000636907 ZNF578Q96N58 590 aaPredicted RBP15.69■□□□□ 0.1
CLN3-252ENST00000636907 PINK1Q9BXM7 581 aa15.69■□□□□ 0.1
CLN3-252ENST00000636907 ZNF350Q9GZX5 532 aa15.69■□□□□ 0.1
CLN3-252ENST00000636907 SOX17Q9H6I2 414 aaPredicted RBP15.69■□□□□ 0.1
CLN3-252ENST00000636907 RXFP3Q9NSD7 469 aa15.69■□□□□ 0.1
CLN3-252ENST00000636907 PDP1Q9P0J1 537 aaPredicted RBP15.69■□□□□ 0.1
CLN3-252ENST00000636907 DTX4Q9Y2E6 619 aa15.69■□□□□ 0.1
CLN3-252ENST00000636907 FAM32AQ9Y421 112 aaKnown RBP15.69■□□□□ 0.1
CLN3-252ENST00000636907 CCDC88CQ9P219 2028 aa15.69■□□□□ 0.1
CLN3-252ENST00000636907 SPEGQ15772 3267 aa15.69■□□□□ 0.1
CLN3-252ENST00000636907 M0R3H8 397 aa15.68■□□□□ 0.1
CLN3-252ENST00000636907 TNFRSF11BO00300 401 aa15.68■□□□□ 0.1
CLN3-252ENST00000636907 HS6ST1O60243 411 aa15.68■□□□□ 0.1
CLN3-252ENST00000636907 PRAMEF2O60811 474 aa15.68■□□□□ 0.1
CLN3-252ENST00000636907 LGI1O95970 557 aa15.68■□□□□ 0.1
CLN3-252ENST00000636907 CLPSP04118 112 aa15.68■□□□□ 0.1
CLN3-252ENST00000636907 THRBP10828 461 aa15.68■□□□□ 0.1
CLN3-252ENST00000636907 CD59P13987 128 aa15.68■□□□□ 0.1
CLN3-252ENST00000636907 CDH12P55289 794 aa15.68■□□□□ 0.1
CLN3-252ENST00000636907 POU6F2P78424 691 aaPredicted RBP15.68■□□□□ 0.1
CLN3-252ENST00000636907 PSG6Q00889 435 aa15.68■□□□□ 0.1
CLN3-252ENST00000636907 ZIK1Q3SY52 487 aaPredicted RBP15.68■□□□□ 0.1
CLN3-252ENST00000636907 UGT2A3Q6UWM9 527 aa15.68■□□□□ 0.1
CLN3-252ENST00000636907 LAPTM4BQ86VI4 370 aa15.68■□□□□ 0.1
CLN3-252ENST00000636907 PPP1R3BQ86XI6 285 aa15.68■□□□□ 0.1
CLN3-252ENST00000636907 DHRSXQ8N5I4 330 aa15.68■□□□□ 0.1
CLN3-252ENST00000636907 OR4C15Q8NGM1 316 aa15.68■□□□□ 0.1
CLN3-252ENST00000636907 OR52P1PQ8NH57 321 aa15.68■□□□□ 0.1
CLN3-252ENST00000636907 PTPMT1Q8WUK0 201 aaPredicted RBP15.68■□□□□ 0.1
CLN3-252ENST00000636907 CYGBQ8WWM9 190 aa15.68■□□□□ 0.1
CLN3-252ENST00000636907 VSTM2LQ96N03 204 aa15.68■□□□□ 0.1
CLN3-252ENST00000636907 CTRCQ99895 268 aa15.68■□□□□ 0.1
CLN3-252ENST00000636907 ANKRD60Q9BZ19 345 aa15.68■□□□□ 0.1
CLN3-252ENST00000636907 MTHFD2LQ9H903 347 aaPredicted RBP15.68■□□□□ 0.1
CLN3-252ENST00000636907 FBXO34Q9NWN3 711 aa15.68■□□□□ 0.1
CLN3-252ENST00000636907 TMEFF2Q9UIK5 374 aaPredicted RBP15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms