RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 MAGEA8P43361 318 aa18.68■□□□□ 0.58
CLN3-250ENST00000636839 YAP1P46937 504 aaKnown RBP18.68■□□□□ 0.58
CLN3-250ENST00000636839 ANXA11P50995 505 aaKnown RBP18.68■□□□□ 0.58
CLN3-250ENST00000636839 PUM1Q14671 1186 aaKnown RBP eCLIP18.68■□□□□ 0.58
CLN3-250ENST00000636839 DCAF12Q5T6F0 453 aa18.68■□□□□ 0.58
CLN3-250ENST00000636839 ATAD3BQ5T9A4 648 aa18.68■□□□□ 0.58
CLN3-250ENST00000636839 MRPL14Q6P1L8 145 aaKnown RBP18.68■□□□□ 0.58
CLN3-250ENST00000636839 ZAR1Q86SH2 424 aa18.68■□□□□ 0.58
CLN3-250ENST00000636839 ARMC8Q8IUR7 673 aa18.68■□□□□ 0.58
CLN3-250ENST00000636839 SLC30A8Q8IWU4 369 aa18.68■□□□□ 0.58
CLN3-250ENST00000636839 GALNT4Q8N4A0 578 aa18.68■□□□□ 0.58
CLN3-250ENST00000636839 SLC2A12Q8TD20 617 aa18.68■□□□□ 0.58
CLN3-250ENST00000636839 CENPNQ96H22 339 aaPredicted RBP18.68■□□□□ 0.58
CLN3-250ENST00000636839 VPS50Q96JG6 964 aa18.68■□□□□ 0.58
CLN3-250ENST00000636839 TRNT1Q96Q11 434 aaKnown RBP18.68■□□□□ 0.58
CLN3-250ENST00000636839 SDF2Q99470 211 aa18.68■□□□□ 0.58
CLN3-250ENST00000636839 VNN3Q9NY84 501 aa18.68■□□□□ 0.58
CLN3-250ENST00000636839 GPC6Q9Y625 555 aaPredicted RBP18.68■□□□□ 0.58
CLN3-250ENST00000636839 CST1P01037 141 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 LDLRP01130 860 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 MAGEA2P43356 314 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 RFX3P48380 749 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 ELAVL1Q15717 326 aaKnown RBP18.67■□□□□ 0.58
CLN3-250ENST00000636839 FRRS1Q6ZNA5 592 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 COX18Q8N8Q8 333 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 ZNF721Q8TF20 911 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 NUDT9Q9BW91 350 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 ITPAQ9BY32 194 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 COQ10BQ9H8M1 238 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 BCL2L10Q9HD36 194 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 EXD2Q9NVH0 621 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 C3orf18Q9UK00 162 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 OAZ3Q9UMX2 235 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 NPIPA5A0A0B4J1W7 369 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 NPIPA7E9PJI5 369 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 COQ9O75208 318 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 EPPINO95925 133 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 CAPNS1P04632 268 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 IFI6P09912 130 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 JMJD7P0C870 316 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 NPIPA8P0DM63 369 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 AGXTP21549 392 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 GALNSP34059 522 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 SLC37A1P57057 533 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 ARHGAP11BQ3KRB8 267 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 TYW3Q6IPR3 259 aaKnown RBP18.67■□□□□ 0.58
CLN3-250ENST00000636839 TBPL2Q6SJ96 375 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 IZUMO2Q6UXV1 221 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 TMEM179BQ7Z7N9 219 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 GLRX5Q86SX6 157 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 RBM45Q8IUH3 476 aaKnown RBP18.67■□□□□ 0.58
CLN3-250ENST00000636839 HS3ST5Q8IZT8 346 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 ZSCAN1Q8NBB4 408 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 HOXB13Q92826 284 aaPredicted RBP18.67■□□□□ 0.58
CLN3-250ENST00000636839 EME1Q96AY2 570 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 C8orf44Q96CB5 159 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 RMND5BQ96G75 393 aaPredicted RBP18.67■□□□□ 0.58
CLN3-250ENST00000636839 LMF1Q96S06 567 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 KLHL4Q9C0H6 718 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 SEC14L3Q9UDX4 400 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 LIPT1Q9Y234 373 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 U3KQV3 271 aa18.67■□□□□ 0.58
CLN3-250ENST00000636839 C9orf172C9J069 976 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 SOCS2O14508 198 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 PRAMEF2O60811 474 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 STK17BO94768 372 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 IGKV1D-16P01601 117 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 IGKV3-11P04433 115 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 KLK3P07288 261 aaPredicted RBP18.66■□□□□ 0.58
CLN3-250ENST00000636839 FESP07332 822 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 CT45A8P0DMV1 189 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 CT45A9P0DMV2 189 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 CT45A2Q5DJT8 189 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 C3orf38Q5JPI3 329 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 DCST2Q5T1A1 773 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 FAM198BQ6UWH4 519 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 TIPARPQ7Z3E1 657 aaKnown RBP18.66■□□□□ 0.58
CLN3-250ENST00000636839 ANKRD37Q7Z713 158 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 LSRQ86X29 649 aaPredicted RBP18.66■□□□□ 0.58
CLN3-250ENST00000636839 VRK2Q86Y07 508 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 OR4D11Q8NGI4 311 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 BBS10Q8TAM1 723 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 LIN37Q96GY3 246 aaPredicted RBP18.66■□□□□ 0.58
CLN3-250ENST00000636839 FBXL20Q96IG2 436 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 ZNF607Q96SK3 696 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 PELOQ9BRX2 385 aaKnown RBP18.66■□□□□ 0.58
CLN3-250ENST00000636839 LMF2Q9BU23 707 aaKnown RBP18.66■□□□□ 0.58
CLN3-250ENST00000636839 DUSP22Q9NRW4 184 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 FOXJ2Q9P0K8 574 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 A0A0G2JPF8 293 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 CLDN24A6NM45 220 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 HNRNPCL2B2RXH8 293 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 HNRNPCL3B7ZW38 293 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 J3KTA2 159 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 PLD2O14939 933 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 ALOX12BO75342 701 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 NKX2-2O95096 273 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 IFNA14P01570 189 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 FABP3P05413 133 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 FTH1P19P0C7X4 201 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms