RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 RILPQ96NA2 401 aa16.41■□□□□ 0.22
CLN3-247ENST00000636351 NXF5Q9H1B4 397 aaKnown RBP16.41■□□□□ 0.22
CLN3-247ENST00000636351 FOLH1BQ9HBA9 442 aa16.41■□□□□ 0.22
CLN3-247ENST00000636351 TIMMDC1Q9NPL8 285 aa16.41■□□□□ 0.22
CLN3-247ENST00000636351 C19orf53Q9UNZ5 99 aaPredicted RBP16.41■□□□□ 0.22
CLN3-247ENST00000636351 CSMD2Q7Z408 3487 aa16.41■□□□□ 0.22
CLN3-247ENST00000636351 A0A0G2JND7 137 aa16.4■□□□□ 0.22
CLN3-247ENST00000636351 UPK1AO00322 258 aa16.4■□□□□ 0.22
CLN3-247ENST00000636351 ANKRD28O15084 1053 aa16.4■□□□□ 0.22
CLN3-247ENST00000636351 ZNF354AO60765 605 aaPredicted RBP16.4■□□□□ 0.22
CLN3-247ENST00000636351 ERN1O75460 977 aaKnown RBP16.4■□□□□ 0.22
CLN3-247ENST00000636351 NADKO95544 446 aaPredicted RBP16.4■□□□□ 0.22
CLN3-247ENST00000636351 S100A3P33764 101 aa16.4■□□□□ 0.22
CLN3-247ENST00000636351 TMED10P49755 219 aaKnown RBP16.4■□□□□ 0.22
CLN3-247ENST00000636351 DCAF7P61962 342 aa16.4■□□□□ 0.22
CLN3-247ENST00000636351 PRR5P85299 388 aa16.4■□□□□ 0.22
CLN3-247ENST00000636351 RBPJQ06330 500 aa16.4■□□□□ 0.22
CLN3-247ENST00000636351 PLCXD2Q0VAA5 305 aa16.4■□□□□ 0.22
CLN3-247ENST00000636351 ZNHIT3Q15649 155 aaPredicted RBP16.4■□□□□ 0.22
CLN3-247ENST00000636351 ZNF630Q2M218 657 aaPredicted RBP16.4■□□□□ 0.22
CLN3-247ENST00000636351 DPY19L1Q2PZI1 675 aa16.4■□□□□ 0.22
CLN3-247ENST00000636351 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16.4■□□□□ 0.22
CLN3-247ENST00000636351 SLC25A25Q6KCM7 469 aa16.4■□□□□ 0.22
CLN3-247ENST00000636351 MTFR2Q6P444 385 aa16.4■□□□□ 0.22
CLN3-247ENST00000636351 RPTNQ6XPR3 784 aa16.4■□□□□ 0.22
CLN3-247ENST00000636351 TMEM64Q6YI46 380 aa16.4■□□□□ 0.22
CLN3-247ENST00000636351 RTL4Q6ZR62 310 aa16.4■□□□□ 0.22
CLN3-247ENST00000636351 GDF7Q7Z4P5 450 aa16.4■□□□□ 0.22
CLN3-247ENST00000636351 PRR22Q8IZ63 422 aa16.4■□□□□ 0.22
CLN3-247ENST00000636351 MIER2Q8N344 545 aa16.4■□□□□ 0.22
CLN3-247ENST00000636351 FAM13CQ8NE31 585 aa16.4■□□□□ 0.22
CLN3-247ENST00000636351 OR4A15Q8NGL6 344 aa16.4■□□□□ 0.22
CLN3-247ENST00000636351 OR5M3Q8NGP4 307 aa16.4■□□□□ 0.22
CLN3-247ENST00000636351 ADIPOR1Q96A54 375 aa16.4■□□□□ 0.22
CLN3-247ENST00000636351 SPACA9Q96E40 222 aaPredicted RBP16.4■□□□□ 0.22
CLN3-247ENST00000636351 LCORQ96JN0 433 aaPredicted RBP16.4■□□□□ 0.22
CLN3-247ENST00000636351 TEX37Q96LM6 180 aa16.4■□□□□ 0.22
CLN3-247ENST00000636351 MS4A4EQ96PG1 132 aa16.4■□□□□ 0.22
CLN3-247ENST00000636351 SIKE1Q9BRV8 207 aa16.4■□□□□ 0.22
CLN3-247ENST00000636351 CCDC28BQ9BUN5 200 aa16.4■□□□□ 0.22
CLN3-247ENST00000636351 C3orf14Q9HBI5 128 aa16.4■□□□□ 0.22
CLN3-247ENST00000636351 NEUROD4Q9HD90 331 aa16.4■□□□□ 0.22
CLN3-247ENST00000636351 ANKRD17O75179 2603 aaKnown RBP16.39■□□□□ 0.21
CLN3-247ENST00000636351 FRG2CA6NGY1 282 aa16.39■□□□□ 0.21
CLN3-247ENST00000636351 CAPN14A8MX76 684 aa16.39■□□□□ 0.21
CLN3-247ENST00000636351 SLC19A2O60779 497 aa16.39■□□□□ 0.21
CLN3-247ENST00000636351 SLC22A3O75751 556 aa16.39■□□□□ 0.21
CLN3-247ENST00000636351 SP1P08047 785 aa16.39■□□□□ 0.21
CLN3-247ENST00000636351 PTGER4P35408 488 aa16.39■□□□□ 0.21
CLN3-247ENST00000636351 SF3A3Q12874 501 aaKnown RBP eCLIP16.39■□□□□ 0.21
CLN3-247ENST00000636351 MLC1Q15049 377 aa16.39■□□□□ 0.21
CLN3-247ENST00000636351 ANXA8L1Q5VT79 327 aa16.39■□□□□ 0.21
CLN3-247ENST00000636351 GALNTL5Q7Z4T8 443 aa16.39■□□□□ 0.21
CLN3-247ENST00000636351 ANKRD46Q86W74 232 aa16.39■□□□□ 0.21
CLN3-247ENST00000636351 SLC44A2Q8IWA5 706 aaPredicted RBP16.39■□□□□ 0.21
CLN3-247ENST00000636351 CLECL1Q8IZS7 167 aa16.39■□□□□ 0.21
CLN3-247ENST00000636351 FAM98AQ8NCA5 519 aaKnown RBP16.39■□□□□ 0.21
CLN3-247ENST00000636351 VPS37AQ8NEZ2 397 aa16.39■□□□□ 0.21
CLN3-247ENST00000636351 NUP43Q8NFH3 380 aa16.39■□□□□ 0.21
CLN3-247ENST00000636351 OR8J2Q8NGG1 315 aa16.39■□□□□ 0.21
CLN3-247ENST00000636351 VSTM2LQ96N03 204 aa16.39■□□□□ 0.21
CLN3-247ENST00000636351 CCDC134Q9H6E4 229 aa16.39■□□□□ 0.21
CLN3-247ENST00000636351 TRIM45Q9H8W5 580 aaPredicted RBP16.39■□□□□ 0.21
CLN3-247ENST00000636351 CHST11Q9NPF2 352 aa16.39■□□□□ 0.21
CLN3-247ENST00000636351 ZCCHC3Q9NUD5 404 aaKnown RBP16.39■□□□□ 0.21
CLN3-247ENST00000636351 ZIM2Q9NZV7 527 aa16.39■□□□□ 0.21
CLN3-247ENST00000636351 PCDHGB4Q9UN71 923 aa16.39■□□□□ 0.21
CLN3-247ENST00000636351 KLF13Q9Y2Y9 288 aaPredicted RBP16.39■□□□□ 0.21
CLN3-247ENST00000636351 OR10H1Q9Y4A9 318 aa16.39■□□□□ 0.21
CLN3-247ENST00000636351 PDZD2O15018 2839 aa16.38■□□□□ 0.21
CLN3-247ENST00000636351 RNASET2O00584 256 aaKnown RBP16.38■□□□□ 0.21
CLN3-247ENST00000636351 ACOX3O15254 700 aa16.38■□□□□ 0.21
CLN3-247ENST00000636351 EMC8O43402 210 aa16.38■□□□□ 0.21
CLN3-247ENST00000636351 NME2P1O60361 137 aa16.38■□□□□ 0.21
CLN3-247ENST00000636351 IFI6P09912 130 aa16.38■□□□□ 0.21
CLN3-247ENST00000636351 FBXO45P0C2W1 286 aa16.38■□□□□ 0.21
CLN3-247ENST00000636351 COX6B1P14854 86 aa16.38■□□□□ 0.21
CLN3-247ENST00000636351 NME2P22392 152 aa16.38■□□□□ 0.21
CLN3-247ENST00000636351 IL12AP29459 219 aa16.38■□□□□ 0.21
CLN3-247ENST00000636351 KRT20P35900 424 aa16.38■□□□□ 0.21
CLN3-247ENST00000636351 PPICP45877 212 aa16.38■□□□□ 0.21
CLN3-247ENST00000636351 DGKQP52824 942 aa16.38■□□□□ 0.21
CLN3-247ENST00000636351 CASP6P55212 293 aa16.38■□□□□ 0.21
CLN3-247ENST00000636351 CORO7P57737 925 aa16.38■□□□□ 0.21
CLN3-247ENST00000636351 C3AR1Q16581 482 aa16.38■□□□□ 0.21
CLN3-247ENST00000636351 MDGA2Q7Z553 956 aa16.38■□□□□ 0.21
CLN3-247ENST00000636351 WDR53Q7Z5U6 358 aaPredicted RBP16.38■□□□□ 0.21
CLN3-247ENST00000636351 ZNF227Q86WZ6 799 aa16.38■□□□□ 0.21
CLN3-247ENST00000636351 DND1Q8IYX4 353 aaKnown RBP16.38■□□□□ 0.21
CLN3-247ENST00000636351 GLB1L3Q8NCI6 653 aaPredicted RBP16.38■□□□□ 0.21
CLN3-247ENST00000636351 PSD4Q8NDX1 1056 aa16.38■□□□□ 0.21
CLN3-247ENST00000636351 FBXO30Q8TB52 745 aa16.38■□□□□ 0.21
CLN3-247ENST00000636351 JADE3Q92613 823 aa16.38■□□□□ 0.21
CLN3-247ENST00000636351 OMA1Q96E52 524 aa16.38■□□□□ 0.21
CLN3-247ENST00000636351 HSPBAP1Q96EW2 488 aa16.38■□□□□ 0.21
CLN3-247ENST00000636351 CHMP6Q96FZ7 201 aa16.38■□□□□ 0.21
CLN3-247ENST00000636351 SCMH1Q96GD3 660 aa16.38■□□□□ 0.21
CLN3-247ENST00000636351 SGCZQ96LD1 299 aa16.38■□□□□ 0.21
CLN3-247ENST00000636351 BTBD9Q96Q07 612 aa16.38■□□□□ 0.21
CLN3-247ENST00000636351 CXorf36Q9H7Y0 433 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms