RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 FRMD6Q96NE9 622 aa18.68■□□□□ 0.58
PTCD3-220ENST00000627371 CCDC115Q96NT0 180 aa18.68■□□□□ 0.58
PTCD3-220ENST00000627371 OR52E6Q96RD3 313 aa18.68■□□□□ 0.58
PTCD3-220ENST00000627371 TMEM120AQ9BXJ8 343 aa18.68■□□□□ 0.58
PTCD3-220ENST00000627371 Q9N2J8 555 aa18.68■□□□□ 0.58
PTCD3-220ENST00000627371 ASF1BQ9NVP2 202 aa18.68■□□□□ 0.58
PTCD3-220ENST00000627371 TRIM33Q9UPN9 1127 aa18.68■□□□□ 0.58
PTCD3-220ENST00000627371 OR10H1Q9Y4A9 318 aa18.68■□□□□ 0.58
PTCD3-220ENST00000627371 FAM234BA2RU67 622 aa18.67■□□□□ 0.58
PTCD3-220ENST00000627371 TP53I11O14683 189 aa18.67■□□□□ 0.58
PTCD3-220ENST00000627371 PEX1O43933 1283 aa18.67■□□□□ 0.58
PTCD3-220ENST00000627371 P04436 131 aa18.67■□□□□ 0.58
PTCD3-220ENST00000627371 HMGN2P05204 90 aaKnown RBP18.67■□□□□ 0.58
PTCD3-220ENST00000627371 PRIM2P49643 509 aa18.67■□□□□ 0.58
PTCD3-220ENST00000627371 MEOX1P50221 254 aa18.67■□□□□ 0.58
PTCD3-220ENST00000627371 GPR85P60893 370 aa18.67■□□□□ 0.58
PTCD3-220ENST00000627371 PMP22Q01453 160 aa18.67■□□□□ 0.58
PTCD3-220ENST00000627371 TP53BP2Q13625 1128 aa18.67■□□□□ 0.58
PTCD3-220ENST00000627371 SQLEQ14534 574 aa18.67■□□□□ 0.58
PTCD3-220ENST00000627371 VPS26BQ4G0F5 336 aa18.67■□□□□ 0.58
PTCD3-220ENST00000627371 CYP27C1Q4G0S4 372 aa18.67■□□□□ 0.58
PTCD3-220ENST00000627371 EXOSC6Q5RKV6 272 aaKnown RBP18.67■□□□□ 0.58
PTCD3-220ENST00000627371 SLC22A10Q63ZE4 541 aa18.67■□□□□ 0.58
PTCD3-220ENST00000627371 BHLHB9Q6PI77 547 aa18.67■□□□□ 0.58
PTCD3-220ENST00000627371 PNPLA5Q7Z6Z6 429 aaPredicted RBP18.67■□□□□ 0.58
PTCD3-220ENST00000627371 OR4N2Q8NGD1 307 aa18.67■□□□□ 0.58
PTCD3-220ENST00000627371 OR5M3Q8NGP4 307 aa18.67■□□□□ 0.58
PTCD3-220ENST00000627371 DNAJB8Q8NHS0 232 aa18.67■□□□□ 0.58
PTCD3-220ENST00000627371 GOT1L1Q8NHS2 421 aaPredicted RBP18.67■□□□□ 0.58
PTCD3-220ENST00000627371 MIB2Q96AX9 1013 aa18.67■□□□□ 0.58
PTCD3-220ENST00000627371 SLC35A4Q96G79 324 aa18.67■□□□□ 0.58
PTCD3-220ENST00000627371 SECISBP2Q96T21 854 aaKnown RBP18.67■□□□□ 0.58
PTCD3-220ENST00000627371 AGPAT4Q9NRZ5 378 aa18.67■□□□□ 0.58
PTCD3-220ENST00000627371 DEPPQ9NTK1 212 aa18.67■□□□□ 0.58
PTCD3-220ENST00000627371 CNIH4Q9P003 139 aa18.67■□□□□ 0.58
PTCD3-220ENST00000627371 OR6C70A6NIJ9 312 aa18.66■□□□□ 0.58
PTCD3-220ENST00000627371 TSPAN2O60636 221 aa18.66■□□□□ 0.58
PTCD3-220ENST00000627371 ABCB7O75027 752 aa18.66■□□□□ 0.58
PTCD3-220ENST00000627371 NKX2-2O95096 273 aa18.66■□□□□ 0.58
PTCD3-220ENST00000627371 CPSF4O95639 269 aaKnown RBP18.66■□□□□ 0.58
PTCD3-220ENST00000627371 CRYABP02511 175 aaKnown RBP18.66■□□□□ 0.58
PTCD3-220ENST00000627371 ACP2P11117 423 aa18.66■□□□□ 0.58
PTCD3-220ENST00000627371 CNR1P21554 472 aa18.66■□□□□ 0.58
PTCD3-220ENST00000627371 ARFIP2P53365 341 aa18.66■□□□□ 0.58
PTCD3-220ENST00000627371 RPP38P78345 283 aaKnown RBP18.66■□□□□ 0.58
PTCD3-220ENST00000627371 GAB1Q13480 694 aa18.66■□□□□ 0.58
PTCD3-220ENST00000627371 LASP1Q14847 261 aaKnown RBP18.66■□□□□ 0.58
PTCD3-220ENST00000627371 METTL21CQ5VZV1 264 aa18.66■□□□□ 0.58
PTCD3-220ENST00000627371 MSANTD1Q6ZTZ1 278 aa18.66■□□□□ 0.58
PTCD3-220ENST00000627371 NUP54Q7Z3B4 507 aa18.66■□□□□ 0.58
PTCD3-220ENST00000627371 CPSF7Q8N684 471 aaKnown RBP18.66■□□□□ 0.58
PTCD3-220ENST00000627371 POGLUT1Q8NBL1 392 aa18.66■□□□□ 0.58
PTCD3-220ENST00000627371 OR5AK3PQ8NH89 298 aa18.66■□□□□ 0.58
PTCD3-220ENST00000627371 SPPL2AQ8TCT8 520 aa18.66■□□□□ 0.58
PTCD3-220ENST00000627371 FAR1Q8WVX9 515 aa18.66■□□□□ 0.58
PTCD3-220ENST00000627371 HGDQ93099 445 aa18.66■□□□□ 0.58
PTCD3-220ENST00000627371 CHMP6Q96FZ7 201 aa18.66■□□□□ 0.58
PTCD3-220ENST00000627371 ZNF385DQ9H6B1 395 aa18.66■□□□□ 0.58
PTCD3-220ENST00000627371 GPATCH2Q9NW75 528 aa18.66■□□□□ 0.58
PTCD3-220ENST00000627371 TMEM45AQ9NWC5 275 aa18.66■□□□□ 0.58
PTCD3-220ENST00000627371 KLHL14Q9P2G3 628 aa18.66■□□□□ 0.58
PTCD3-220ENST00000627371 CNOT11Q9UKZ1 510 aaKnown RBP18.66■□□□□ 0.58
PTCD3-220ENST00000627371 CBLCQ9ULV8 474 aa18.66■□□□□ 0.58
PTCD3-220ENST00000627371 ZGRF1Q86YA3 2104 aa18.65■□□□□ 0.58
PTCD3-220ENST00000627371 A0A0G2JMM0 328 aa18.65■□□□□ 0.58
PTCD3-220ENST00000627371 RNF103-CHMP3A0A140T963 221 aa18.65■□□□□ 0.58
PTCD3-220ENST00000627371 A0A1W2PPB8 328 aa18.65■□□□□ 0.58
PTCD3-220ENST00000627371 A0A1W2PRS3 328 aa18.65■□□□□ 0.58
PTCD3-220ENST00000627371 KIR3DP1A8MWS1 328 aa18.65■□□□□ 0.58
PTCD3-220ENST00000627371 UGT2B11O75310 529 aa18.65■□□□□ 0.58
PTCD3-220ENST00000627371 REM1O75628 298 aa18.65■□□□□ 0.58
PTCD3-220ENST00000627371 PLA2G2AP14555 144 aa18.65■□□□□ 0.58
PTCD3-220ENST00000627371 NCF2P19878 526 aaPredicted RBP18.65■□□□□ 0.58
PTCD3-220ENST00000627371 UQCRC2P22695 453 aa18.65■□□□□ 0.58
PTCD3-220ENST00000627371 IL12BP29460 328 aa18.65■□□□□ 0.58
PTCD3-220ENST00000627371 GABRA3P34903 492 aa18.65■□□□□ 0.58
PTCD3-220ENST00000627371 KRT20P35900 424 aa18.65■□□□□ 0.58
PTCD3-220ENST00000627371 RCAN2Q14206 197 aa18.65■□□□□ 0.58
PTCD3-220ENST00000627371 TIGD2Q4W5G0 525 aa18.65■□□□□ 0.58
PTCD3-220ENST00000627371 PRAMEF20Q5VT98 475 aa18.65■□□□□ 0.58
PTCD3-220ENST00000627371 ZNF324BQ6AW86 544 aaPredicted RBP18.65■□□□□ 0.58
PTCD3-220ENST00000627371 CDC73Q6P1J9 531 aa18.65■□□□□ 0.58
PTCD3-220ENST00000627371 TMEM81Q6P7N7 255 aa18.65■□□□□ 0.58
PTCD3-220ENST00000627371 FUNDC1Q8IVP5 155 aa18.65■□□□□ 0.58
PTCD3-220ENST00000627371 ZFP62Q8NB50 900 aaPredicted RBP18.65■□□□□ 0.58
PTCD3-220ENST00000627371 SLC16A11Q8NCK7 471 aa18.65■□□□□ 0.58
PTCD3-220ENST00000627371 OR2M7Q8NG81 312 aa18.65■□□□□ 0.58
PTCD3-220ENST00000627371 FBXO30Q8TB52 745 aa18.65■□□□□ 0.58
PTCD3-220ENST00000627371 GPR151Q8TDV0 419 aa18.65■□□□□ 0.58
PTCD3-220ENST00000627371 SLC9A6Q92581 669 aa18.65■□□□□ 0.58
PTCD3-220ENST00000627371 DIO2Q92813 273 aa18.65■□□□□ 0.58
PTCD3-220ENST00000627371 C16orf58Q96GQ5 468 aa18.65■□□□□ 0.58
PTCD3-220ENST00000627371 COL21A1Q96P44 957 aa18.65■□□□□ 0.58
PTCD3-220ENST00000627371 PANX1Q96RD7 426 aa18.65■□□□□ 0.58
PTCD3-220ENST00000627371 FAM173AQ9BQD7 235 aa18.65■□□□□ 0.58
PTCD3-220ENST00000627371 ACTRT3Q9BYD9 372 aa18.65■□□□□ 0.58
PTCD3-220ENST00000627371 RABEP2Q9H5N1 569 aa18.65■□□□□ 0.58
PTCD3-220ENST00000627371 OLAHQ9NV23 265 aa18.65■□□□□ 0.58
PTCD3-220ENST00000627371 RP1L1Q8IWN7 2480 aaPredicted RBP18.65■□□□□ 0.58
PTCD3-220ENST00000627371 ANKRD33BA6NCL7 494 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms