RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	PNPT1	Q8TCS8	783 aa	Known RBP	11.77	□□□□□ -0.53
UPF1-208	ENST00000600012	ADAMTS18	Q8TE60	1221 aa		11.77	□□□□□ -0.53
UPF1-208	ENST00000600012	ZNF681	Q96N22	645 aa		11.77	□□□□□ -0.53
UPF1-208	ENST00000600012	AMDHD1	Q96NU7	426 aa		11.77	□□□□□ -0.53
UPF1-208	ENST00000600012	ZNF700	Q9H0M5	742 aa		11.77	□□□□□ -0.53
UPF1-208	ENST00000600012	PIF1	Q9H611	641 aa		11.77	□□□□□ -0.53
UPF1-208	ENST00000600012	CLK4	Q9HAZ1	481 aa	Known RBP	11.77	□□□□□ -0.53
UPF1-208	ENST00000600012	PRTFDC1	Q9NRG1	225 aa		11.77	□□□□□ -0.53
UPF1-208	ENST00000600012	SIRT3	Q9NTG7	399 aa	Predicted RBP	11.77	□□□□□ -0.53
UPF1-208	ENST00000600012	ACSS1	Q9NUB1	689 aa	Predicted RBP	11.77	□□□□□ -0.53
UPF1-208	ENST00000600012	TAS2R9	Q9NYW1	312 aa		11.77	□□□□□ -0.53
UPF1-208	ENST00000600012	SLC7A8	Q9UHI5	535 aa		11.77	□□□□□ -0.53
UPF1-208	ENST00000600012	PSME2	Q9UL46	239 aa		11.77	□□□□□ -0.53
UPF1-208	ENST00000600012	PCDHGB4	Q9UN71	923 aa		11.77	□□□□□ -0.53
UPF1-208	ENST00000600012	USP22	Q9UPT9	525 aa		11.77	□□□□□ -0.53
UPF1-208	ENST00000600012	MRPS33	Q9Y291	106 aa	Known RBP	11.77	□□□□□ -0.53
UPF1-208	ENST00000600012	ZNF780B	Q9Y6R6	833 aa		11.77	□□□□□ -0.53
UPF1-208	ENST00000600012	APC	P25054	2843 aa		11.77	□□□□□ -0.53
UPF1-208	ENST00000600012	RNF103-CHMP3	A0A140T963	221 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	OR5H15	A6NDH6	313 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	PRORSD1P	A6NEY8	169 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	OR2W5	A6NFC9	320 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	TGFBR3L	H3BV60	316 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	CLIC1	O00299	241 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	RASAL1	O95294	804 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	WDPCP	O95876	746 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	FH	P07954	510 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	ZCCHC18	P0CG32	403 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	CPM	P14384	443 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	TCN1	P20061	433 aa	Predicted RBP	11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	GPC1	P35052	558 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	MSX2	P35548	267 aa	Predicted RBP	11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	XK	P51811	444 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	BTG2	P78543	158 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	SLC13A2	Q13183	592 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	PCOLCE	Q15113	449 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	CEBPE	Q15744	281 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	ABHD17B	Q5VST6	288 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	ZC3H7A	Q8IWR0	971 aa	Known RBP	11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	ZNF595	Q8IYB9	648 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	C10orf111	Q8N326	155 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	LRRC25	Q8N386	305 aa	Predicted RBP	11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	FBXW8	Q8N3Y1	598 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	FAM13C	Q8NE31	585 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	OR8J3	Q8NGG0	315 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	OR9A2	Q8NGT5	310 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	ZFP90	Q8TF47	636 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	ITLN2	Q8WWU7	325 aa	Predicted RBP	11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	TANK	Q92844	425 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	ANKRD9	Q96BM1	317 aa	Predicted RBP	11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	TBC1D20	Q96BZ9	403 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	PHF12	Q96QT6	1004 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	SLC35A5	Q9BS91	424 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	THUMPD3	Q9BV44	507 aa	Known RBP	11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	MMADHC	Q9H3L0	296 aa	Predicted RBP	11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	NEUROD4	Q9HD90	331 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	PRDM9	Q9NQV7	894 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	TEKT2	Q9UIF3	430 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	SNX8	Q9Y5X2	465 aa		11.76	□□□□□ -0.53
UPF1-208	ENST00000600012	CACNA1C	Q13936	2221 aa		11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	TRGV8	A0A0C4DH27	118 aa		11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	GPR75	O95800	540 aa		11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	F10	P00742	488 aa		11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	CELA2A	P08217	269 aa		11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	CYC1	P08574	325 aa		11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	ITGAM	P11215	1152 aa		11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	MAOA	P21397	527 aa		11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	ME2	P23368	584 aa		11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	CA7	P43166	264 aa		11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	GSK3B	P49841	420 aa		11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	LIPE	Q05469	1076 aa		11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	RBPJ	Q06330	500 aa		11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	MLC1	Q15049	377 aa		11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	SPDYE7P	Q495Y7	208 aa		11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	SAMD4B	Q5PRF9	694 aa	Known RBP	11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	MFSD4B	Q5TF39	518 aa		11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	TMEM205	Q6UW68	189 aa		11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	TMEM107	Q6UX40	140 aa		11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	ANGPTL8	Q6UXH0	198 aa		11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	RPTN	Q6XPR3	784 aa		11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	SZRD1	Q7Z422	152 aa		11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	IFNE	Q86WN2	208 aa		11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	ZNF808	Q8N4W9	903 aa	Predicted RBP	11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	ADCY4	Q8NFM4	1077 aa		11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	DOK4	Q8TEW6	326 aa		11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	CCDC120	Q96HB5	630 aa		11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	MAGED4	Q96JG8	741 aa		11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	ALG2	Q9H553	416 aa		11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	TPT1P8	Q9HAU6	139 aa		11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	LANCL2	Q9NS86	450 aa		11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	SEC14L3	Q9UDX4	400 aa		11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	CD300A	Q9UGN4	299 aa		11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	MKL2	Q9ULH7	1088 aa		11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	NCOA6	Q14686	2063 aa	Predicted RBP	11.75	□□□□□ -0.53
UPF1-208	ENST00000600012	EVPLL	A8MZ36	301 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012		H0YHG0	523 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	CCL21	O00585	134 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	CLDN4	O14493	209 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	PRAMEF2	O60811	474 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	CTNS	O60931	367 aa		11.74	□□□□□ -0.53

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