RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 PLOD3O60568 738 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 PRAMEF2O60811 474 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 DNAJC8O75937 253 aaPredicted RBP11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 HOXB9P17482 250 aaPredicted RBP11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 MMP11P24347 488 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 OTX2P32243 289 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 KHKP50053 298 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 SLC7A2P52569 658 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 EFNA3P52797 238 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 MTPNP58546 118 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 EEF1A2Q05639 463 aaKnown RBP11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 ZNF155Q12901 538 aaPredicted RBP11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 FADDQ13158 208 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 SSPNQ14714 243 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 TRMT12Q53H54 448 aaKnown RBP11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 RUNDC3AQ59EK9 446 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 FAM69BQ5VUD6 431 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 SAXO2Q658L1 398 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 NANOGP8Q6NSW7 305 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 JMJD6Q6NYC1 403 aaPredicted RBP11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 PAPD4Q6PIY7 484 aaKnown RBP11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 FAM111BQ6SJ93 734 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 DGAT2L6Q6ZPD8 337 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 GDF7Q7Z4P5 450 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 MSRB3Q8IXL7 192 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 CLEC4FQ8N1N0 589 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 OR2L13Q8N349 312 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 MORN4Q8NDC4 146 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 NUP43Q8NFH3 380 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 OR7G1Q8NGA0 311 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 OR52R1Q8NGF1 315 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 OR52N2Q8NGI0 321 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 SLC2A12Q8TD20 617 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 ZFP90Q8TF47 636 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 PTPMT1Q8WUK0 201 aaPredicted RBP11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 JADE3Q92613 823 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 SLC7A6OSQ96CW6 309 aaPredicted RBP11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 NEURL3Q96EH8 262 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 FBXL20Q96IG2 436 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 ECSITQ9BQ95 431 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 GPATCH1Q9BRR8 931 aaKnown RBP11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 OR8D2Q9GZM6 311 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 NANOGQ9H9S0 305 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 EQTNQ9NQ60 294 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 BCAP29Q9UHQ4 241 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 PRPF19Q9UMS4 504 aaKnown RBP11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 FAF1Q9UNN5 650 aaPredicted RBP11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 C19orf53Q9UNZ5 99 aaPredicted RBP11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 ERVK-19Q9WJR5 959 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 LOC102723996A0A087X1L8 192 aa11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 IGHV3-20A0A0C4DH32 117 aa11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 UPK1AO00322 258 aa11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 DNAJA2O60884 412 aa11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 SEC24DO94855 1032 aaPredicted RBP11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 CT62P0C5K7 136 aa11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 SLC6A2P23975 617 aa11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 ITGA3P26006 1051 aa11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 PGM1P36871 562 aa11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 CRATP43155 626 aa11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 MAGEA8P43361 318 aa11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 PRIM2P49643 509 aa11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 TXNL4AP83876 142 aaKnown RBP11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 EXOSC7Q15024 291 aaKnown RBP11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 ZNHIT3Q15649 155 aaPredicted RBP11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 CYP51A1Q16850 503 aa11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 RABL3Q5HYI8 236 aa11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 SAMD4BQ5PRF9 694 aaKnown RBP11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 C8orf82Q6P1X6 216 aaPredicted RBP11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 RNF111Q6ZNA4 994 aa11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 C6orf120Q7Z4R8 191 aa11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 RNF130Q86XS8 419 aa11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 KIF2BQ8N4N8 673 aa11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 DOK4Q8TEW6 326 aa11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 TMEM125Q96AQ2 219 aa11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 NACC2Q96BF6 587 aa11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 C8orf44Q96CB5 159 aa11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 CTHRC1Q96CG8 243 aa11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 THTPAQ9BU02 230 aa11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 MFRPQ9BY79 579 aa11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 TRIM8Q9BZR9 551 aa11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 NTMQ9P121 344 aa11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 PRODH2Q9UF12 536 aa11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 CFL2Q9Y281 166 aa11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 PCDHGA9Q9Y5G4 932 aaKnown RBP11.18□□□□□ -0.62
SHKBP1-213ENST00000597325 NSG1A0A0A6YYJ2 146 aa11.17□□□□□ -0.62
SHKBP1-213ENST00000597325 TMEM247A6NEH6 219 aa11.17□□□□□ -0.62
SHKBP1-213ENST00000597325 PEX12O00623 359 aa11.17□□□□□ -0.62
SHKBP1-213ENST00000597325 NME4O00746 187 aa11.17□□□□□ -0.62
SHKBP1-213ENST00000597325 CREG1O75629 220 aa11.17□□□□□ -0.62
SHKBP1-213ENST00000597325 CBX7O95931 251 aa11.17□□□□□ -0.62
SHKBP1-213ENST00000597325 HMGN2P05204 90 aaKnown RBP11.17□□□□□ -0.62
SHKBP1-213ENST00000597325 SSTR4P31391 388 aa11.17□□□□□ -0.62
SHKBP1-213ENST00000597325 PTGER4P35408 488 aa11.17□□□□□ -0.62
SHKBP1-213ENST00000597325 EEFSECP57772 596 aaKnown RBP11.17□□□□□ -0.62
SHKBP1-213ENST00000597325 RPS26P62854 115 aaKnown RBP11.17□□□□□ -0.62
SHKBP1-213ENST00000597325 MGAT2Q10469 447 aa11.17□□□□□ -0.62
SHKBP1-213ENST00000597325 FUT7Q11130 342 aa11.17□□□□□ -0.62
SHKBP1-213ENST00000597325 SELPLGQ14242 412 aa11.17□□□□□ -0.62
SHKBP1-213ENST00000597325 LASP1Q14847 261 aaKnown RBP11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms