RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 SLC17A7Q9P2U7 560 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 LGALS13Q9UHV8 139 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 MID2Q9UJV3 735 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 MAPRE3Q9UPY8 281 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 FIS1Q9Y3D6 152 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 PCNX3Q9H6A9 2034 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 INTS1Q8N201 2190 aaKnown RBP11.91□□□□□ -0.5
LIG1-212ENST00000596549 MYO9AB2RTY4 2548 aa11.9□□□□□ -0.5
LIG1-212ENST00000596549 TLDC2A0PJX2 215 aa11.9□□□□□ -0.5
LIG1-212ENST00000596549 TMEM233B4DJY2 109 aa11.9□□□□□ -0.5
LIG1-212ENST00000596549 CRCPO75575 148 aa11.9□□□□□ -0.5
LIG1-212ENST00000596549 TRAPPC6AO75865 159 aa11.9□□□□□ -0.5
LIG1-212ENST00000596549 ALDH3A1P30838 453 aa11.9□□□□□ -0.5
LIG1-212ENST00000596549 ARRB2P32121 409 aa11.9□□□□□ -0.5
LIG1-212ENST00000596549 ZFP36L2P47974 494 aaKnown RBP11.9□□□□□ -0.5
LIG1-212ENST00000596549 NCBP2P52298 156 aaKnown RBP eCLIP11.9□□□□□ -0.5
LIG1-212ENST00000596549 ZNF155Q12901 538 aaPredicted RBP11.9□□□□□ -0.5
LIG1-212ENST00000596549 ERCC6LQ2NKX8 1250 aa11.9□□□□□ -0.5
LIG1-212ENST00000596549 ZNF385BQ569K4 471 aa11.9□□□□□ -0.5
LIG1-212ENST00000596549 RIPPLY2Q5TAB7 128 aa11.9□□□□□ -0.5
LIG1-212ENST00000596549 VASNQ6EMK4 673 aa11.9□□□□□ -0.5
LIG1-212ENST00000596549 SLC30A6Q6NXT4 461 aa11.9□□□□□ -0.5
LIG1-212ENST00000596549 TMEM107Q6UX40 140 aa11.9□□□□□ -0.5
LIG1-212ENST00000596549 OTOGQ6ZRI0 2925 aa11.9□□□□□ -0.5
LIG1-212ENST00000596549 RNF165Q6ZSG1 346 aa11.9□□□□□ -0.5
LIG1-212ENST00000596549 Q6ZSR9 355 aa11.9□□□□□ -0.5
LIG1-212ENST00000596549 IKBIPQ70UQ0 350 aa11.9□□□□□ -0.5
LIG1-212ENST00000596549 WDSUB1Q8N9V3 476 aa11.9□□□□□ -0.5
LIG1-212ENST00000596549 FAM83FQ8NEG4 500 aaPredicted RBP11.9□□□□□ -0.5
LIG1-212ENST00000596549 OR4N2Q8NGD1 307 aa11.9□□□□□ -0.5
LIG1-212ENST00000596549 OR10Q1Q8NGQ4 319 aa11.9□□□□□ -0.5
LIG1-212ENST00000596549 OR1J4Q8NGS1 313 aa11.9□□□□□ -0.5
LIG1-212ENST00000596549 FAM76AQ8TAV0 307 aa11.9□□□□□ -0.5
LIG1-212ENST00000596549 COL21A1Q96P44 957 aa11.9□□□□□ -0.5
LIG1-212ENST00000596549 FAM111AQ96PZ2 611 aa11.9□□□□□ -0.5
LIG1-212ENST00000596549 TIMP4Q99727 224 aa11.9□□□□□ -0.5
LIG1-212ENST00000596549 UGT2B28Q9BY64 529 aa11.9□□□□□ -0.5
LIG1-212ENST00000596549 GLIPR2Q9H4G4 154 aa11.9□□□□□ -0.5
LIG1-212ENST00000596549 SERHLQ9NQF3 203 aa11.9□□□□□ -0.5
LIG1-212ENST00000596549 RRAGDQ9NQL2 400 aaPredicted RBP11.9□□□□□ -0.5
LIG1-212ENST00000596549 ALKBH4Q9NXW9 302 aa11.9□□□□□ -0.5
LIG1-212ENST00000596549 SENP1Q9P0U3 644 aa11.9□□□□□ -0.5
LIG1-212ENST00000596549 DNAJC15Q9Y5T4 150 aa11.9□□□□□ -0.5
LIG1-212ENST00000596549 WIF1Q9Y5W5 379 aa11.9□□□□□ -0.5
LIG1-212ENST00000596549 TEP1Q99973 2627 aaKnown RBP11.89□□□□□ -0.51
LIG1-212ENST00000596549 A0A087WV62 115 aa11.89□□□□□ -0.51
LIG1-212ENST00000596549 UPK1AO00322 258 aa11.89□□□□□ -0.51
LIG1-212ENST00000596549 AZIN1O14977 448 aa11.89□□□□□ -0.51
LIG1-212ENST00000596549 SPAG7O75391 227 aa11.89□□□□□ -0.51
LIG1-212ENST00000596549 BCAS2O75934 225 aaPredicted RBP11.89□□□□□ -0.51
LIG1-212ENST00000596549 CREB1P16220 341 aa11.89□□□□□ -0.51
LIG1-212ENST00000596549 BMP7P18075 431 aa11.89□□□□□ -0.51
LIG1-212ENST00000596549 SDC1P18827 310 aa11.89□□□□□ -0.51
LIG1-212ENST00000596549 SSTR2P30874 369 aa11.89□□□□□ -0.51
LIG1-212ENST00000596549 SNTA1Q13424 505 aa11.89□□□□□ -0.51
LIG1-212ENST00000596549 TOMM20Q15388 145 aa11.89□□□□□ -0.51
LIG1-212ENST00000596549 ANKRD26P1Q6NSI1 321 aa11.89□□□□□ -0.51
LIG1-212ENST00000596549 POMZP3Q6PJE2 187 aa11.89□□□□□ -0.51
LIG1-212ENST00000596549 ZCCHC23Q6ZST2 131 aa11.89□□□□□ -0.51
LIG1-212ENST00000596549 WDR53Q7Z5U6 358 aaPredicted RBP11.89□□□□□ -0.51
LIG1-212ENST00000596549 YRDCQ86U90 279 aaKnown RBP11.89□□□□□ -0.51
LIG1-212ENST00000596549 DMRTC2Q8IXT2 367 aaPredicted RBP11.89□□□□□ -0.51
LIG1-212ENST00000596549 TNIP2Q8NFZ5 429 aa11.89□□□□□ -0.51
LIG1-212ENST00000596549 EFHD2Q96C19 240 aaPredicted RBP11.89□□□□□ -0.51
LIG1-212ENST00000596549 AMDHD1Q96NU7 426 aa11.89□□□□□ -0.51
LIG1-212ENST00000596549 BBS4Q96RK4 519 aa11.89□□□□□ -0.51
LIG1-212ENST00000596549 ADOQ96SZ5 270 aa11.89□□□□□ -0.51
LIG1-212ENST00000596549 OR2B2Q9GZK3 357 aa11.89□□□□□ -0.51
LIG1-212ENST00000596549 STMN4Q9H169 189 aaPredicted RBP11.89□□□□□ -0.51
LIG1-212ENST00000596549 LRTM1Q9HBL6 345 aa11.89□□□□□ -0.51
LIG1-212ENST00000596549 KCNJ16Q9NPI9 418 aa11.89□□□□□ -0.51
LIG1-212ENST00000596549 TAS2R7Q9NYW3 318 aa11.89□□□□□ -0.51
LIG1-212ENST00000596549 FLRT3Q9NZU0 649 aa11.89□□□□□ -0.51
LIG1-212ENST00000596549 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.89□□□□□ -0.51
LIG1-212ENST00000596549 FBXL2Q9UKC9 423 aa11.89□□□□□ -0.51
LIG1-212ENST00000596549 V9GYY5 206 aaPredicted RBP11.89□□□□□ -0.51
LIG1-212ENST00000596549 ENO4A6NNW6 628 aa11.88□□□□□ -0.51
LIG1-212ENST00000596549 PLOD2O00469 737 aa11.88□□□□□ -0.51
LIG1-212ENST00000596549 LSM1O15116 133 aaKnown RBP11.88□□□□□ -0.51
LIG1-212ENST00000596549 TRIM13O60858 407 aa11.88□□□□□ -0.51
LIG1-212ENST00000596549 ABCB7O75027 752 aa11.88□□□□□ -0.51
LIG1-212ENST00000596549 COQ9O75208 318 aa11.88□□□□□ -0.51
LIG1-212ENST00000596549 REM1O75628 298 aa11.88□□□□□ -0.51
LIG1-212ENST00000596549 HOXD4P09016 255 aaPredicted RBP11.88□□□□□ -0.51
LIG1-212ENST00000596549 IL12BP29460 328 aa11.88□□□□□ -0.51
LIG1-212ENST00000596549 NTSP30990 170 aa11.88□□□□□ -0.51
LIG1-212ENST00000596549 MPIP34949 423 aa11.88□□□□□ -0.51
LIG1-212ENST00000596549 GAS1P54826 345 aa11.88□□□□□ -0.51
LIG1-212ENST00000596549 DLX5P56178 289 aa11.88□□□□□ -0.51
LIG1-212ENST00000596549 RPL38P63173 70 aaKnown RBP11.88□□□□□ -0.51
LIG1-212ENST00000596549 TLE4Q04727 773 aa11.88□□□□□ -0.51
LIG1-212ENST00000596549 RFTN2Q52LD8 501 aaPredicted RBP11.88□□□□□ -0.51
LIG1-212ENST00000596549 WDR93Q6P2C0 686 aa11.88□□□□□ -0.51
LIG1-212ENST00000596549 SLC44A2Q8IWA5 706 aaPredicted RBP11.88□□□□□ -0.51
LIG1-212ENST00000596549 OR2L13Q8N349 312 aa11.88□□□□□ -0.51
LIG1-212ENST00000596549 TCP10LQ8TDR4 215 aa11.88□□□□□ -0.51
LIG1-212ENST00000596549 TWIST2Q8WVJ9 160 aa11.88□□□□□ -0.51
LIG1-212ENST00000596549 CAVIN3Q969G5 261 aa11.88□□□□□ -0.51
LIG1-212ENST00000596549 GFM2Q969S9 779 aaKnown RBP11.88□□□□□ -0.51
LIG1-212ENST00000596549 ZNF764Q96H86 408 aaPredicted RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms