RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 PRDM9Q9NQV7 894 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 KLHL1Q9NR64 748 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 ZNF638Q14966 1978 aaKnown RBP9.26□□□□□ -0.93
LIG3-216ENST00000593099 PLD2O14939 933 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 NAT2P11245 290 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 MTHFD2P13995 350 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 SOX6P35712 828 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 SLC6A12P48065 614 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 CD47Q08722 323 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 TMEM44Q2T9K0 475 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 TIMM50Q3ZCQ8 353 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 SLC15A3Q8IY34 581 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 PRR22Q8IZ63 422 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 METTL25Q8N6Q8 603 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 MVB12AQ96EY5 273 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 GUCD1Q96NT3 240 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 SPRTNQ9H040 489 aaPredicted RBP9.26□□□□□ -0.93
LIG3-216ENST00000593099 OR51V1Q9H2C8 321 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 ZNF225Q9UK10 706 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 VSTM5A8MXK1 200 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 HTR1EP28566 365 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 GPR143P51810 404 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 CTBP2P56545 445 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 PCDH1Q08174 1060 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 EXOSC7Q15024 291 aaKnown RBP9.26□□□□□ -0.93
LIG3-216ENST00000593099 SF3A2Q15428 464 aaKnown RBP9.26□□□□□ -0.93
LIG3-216ENST00000593099 NEDD8Q15843 81 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 OR10Q1Q8NGQ4 319 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 SFXN5Q8TD22 340 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 C3orf30Q96M34 536 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 PLGRKTQ9HBL7 147 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 RASSF1Q9NS23 344 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 EDARQ9UNE0 448 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 HEMK1Q9Y5R4 338 aaPredicted RBP9.26□□□□□ -0.93
LIG3-216ENST00000593099 NCOR1O75376 2440 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 HMX2A2RU54 273 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 IL33O95760 270 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 MAGEA2P43356 314 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 HSD17B7P56937 341 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 UBQLNLQ8IYU4 475 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 OR2AJ1Q8NGZ0 328 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 TESCQ96BS2 214 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 ALPK1Q96QP1 1244 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 OR1F2PQ96R84 312 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 MNTQ99583 582 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 DPH2Q9BQC3 489 aaPredicted RBP9.25□□□□□ -0.93
LIG3-216ENST00000593099 SACM1LQ9NTJ5 587 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 SEMA4GQ9NTN9 838 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 ZNF624Q9P2J8 865 aaPredicted RBP9.25□□□□□ -0.93
LIG3-216ENST00000593099 GSTK1Q9Y2Q3 226 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 PPM1BO75688 479 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 CAPN3P20807 821 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 FPR1P21462 350 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 ACVR2AP27037 513 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 GDI2P50395 445 aaKnown RBP9.25□□□□□ -0.93
LIG3-216ENST00000593099 CDK9P50750 372 aaKnown RBP9.25□□□□□ -0.93
LIG3-216ENST00000593099 PMS2P3Q13401 168 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 PTGES3Q15185 160 aaKnown RBP9.25□□□□□ -0.93
LIG3-216ENST00000593099 TRIM46Q7Z4K8 759 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 NAGSQ8N159 534 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 OR2A1Q8NGT9 310 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 GRPEL2Q8TAA5 225 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 EID2BQ96D98 161 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 RNFT2Q96EX2 444 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 SFXN2Q96NB2 322 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 GPR78Q96P69 363 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 RBP7Q96R05 134 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 UTP23Q9BRU9 249 aaKnown RBP9.25□□□□□ -0.93
LIG3-216ENST00000593099 INPP5KQ9BT40 448 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 LYRM4Q9HD34 91 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 TVP23BQ9NYZ1 205 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 MAN2B2Q9Y2E5 1009 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 GPR45Q9Y5Y3 372 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 AP4B1Q9Y6B7 739 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 LRIT2A6NDA9 550 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 METTL21EPA6NDL7 271 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 EFCAB9A8MZ26 197 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 BLOC1S5-TXNDC5H3BN57 136 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 NSA2O95478 260 aaKnown RBP9.25□□□□□ -0.93
LIG3-216ENST00000593099 CCDC58Q4VC31 144 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 PYHIN1Q6K0P9 492 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 TMPRSS11AQ6ZMR5 421 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 PROKR1Q8TCW9 393 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 TAAR9Q96RI9 348 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 ADOQ96SZ5 270 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 NAA11Q9BSU3 229 aaPredicted RBP9.25□□□□□ -0.93
LIG3-216ENST00000593099 C11orf16Q9NQ32 467 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 TEX10Q9NXF1 929 aaPredicted RBP9.25□□□□□ -0.93
LIG3-216ENST00000593099 PCDHB14Q9Y5E9 798 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 SLC22A7Q9Y694 548 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 IGHV1OR21-1A0A087WYE8 117 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 WWP2O00308 870 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 SLC35E2P0CK97 266 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 DLSTP36957 453 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 OR2B6P58173 313 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 RHDQ02161 417 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 LPCAT4Q643R3 524 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 NAXDQ8IW45 347 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 MZB1Q8WU39 189 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 HS6ST2Q96MM7 605 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms