RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 CDH13P55290 713 aa9.62□□□□□ -0.87
RFFL-209ENST00000581265 SRYQ05066 204 aa9.62□□□□□ -0.87
RFFL-209ENST00000581265 BCL2A1Q16548 175 aa9.62□□□□□ -0.87
RFFL-209ENST00000581265 CT45A2Q5DJT8 189 aa9.62□□□□□ -0.87
RFFL-209ENST00000581265 LETMD1Q6P1Q0 360 aa9.62□□□□□ -0.87
RFFL-209ENST00000581265 AAGABQ6PD74 315 aa9.62□□□□□ -0.87
RFFL-209ENST00000581265 IFNEQ86WN2 208 aa9.62□□□□□ -0.87
RFFL-209ENST00000581265 C1orf52Q8N6N3 182 aaKnown RBP9.62□□□□□ -0.87
RFFL-209ENST00000581265 ZNF675Q8TD23 568 aa9.62□□□□□ -0.87
RFFL-209ENST00000581265 ZNF483Q8TF39 744 aaPredicted RBP9.62□□□□□ -0.87
RFFL-209ENST00000581265 TMBIM1Q969X1 311 aa9.62□□□□□ -0.87
RFFL-209ENST00000581265 INTS12Q96CB8 462 aaKnown RBP9.62□□□□□ -0.87
RFFL-209ENST00000581265 KLHL29Q96CT2 875 aa9.62□□□□□ -0.87
RFFL-209ENST00000581265 SLC35A4Q96G79 324 aa9.62□□□□□ -0.87
RFFL-209ENST00000581265 COL21A1Q96P44 957 aa9.62□□□□□ -0.87
RFFL-209ENST00000581265 BTBD9Q96Q07 612 aa9.62□□□□□ -0.87
RFFL-209ENST00000581265 TSPYL1Q9H0U9 437 aa9.62□□□□□ -0.87
RFFL-209ENST00000581265 MRPL46Q9H2W6 279 aaKnown RBP9.62□□□□□ -0.87
RFFL-209ENST00000581265 PIGMQ9H3S5 423 aa9.62□□□□□ -0.87
RFFL-209ENST00000581265 GALNT8Q9NY28 637 aa9.62□□□□□ -0.87
RFFL-209ENST00000581265 EHD3Q9NZN3 535 aa9.62□□□□□ -0.87
RFFL-209ENST00000581265 CLCF1Q9UBD9 225 aa9.62□□□□□ -0.87
RFFL-209ENST00000581265 VPS29Q9UBQ0 182 aa9.62□□□□□ -0.87
RFFL-209ENST00000581265 ZNF225Q9UK10 706 aa9.62□□□□□ -0.87
RFFL-209ENST00000581265 MED12LQ86YW9 2145 aa9.62□□□□□ -0.87
RFFL-209ENST00000581265 ARID1AO14497 2285 aa9.62□□□□□ -0.87
RFFL-209ENST00000581265 TNFSF12-TNFSF13A0A0A6YY99 330 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 A0A1W2PPR1 153 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 SH3D21A4FU49 640 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 PLOD2O00469 737 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 CASKO14936 926 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 ZIC3O60481 467 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 TSPAN2O60636 221 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 TNFSF13O75888 250 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 CRHP06850 196 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 HSD3B1P14060 373 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 PCSK2P16519 638 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 ZNF708P17019 499 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 HSD3B2P26439 372 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 HSD17B3P37058 310 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 ALDH9A1P49189 494 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 STARP49675 285 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 LHX2P50458 406 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 PNLIPRP2P54317 469 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 CLDN18P56856 261 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 PSPHP78330 225 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 MRPS35P82673 323 aaKnown RBP9.61□□□□□ -0.87
RFFL-209ENST00000581265 LTB4RQ15722 352 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 ZNF628Q5EBL2 1059 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 UBAP2Q5T6F2 1119 aaKnown RBP9.61□□□□□ -0.87
RFFL-209ENST00000581265 FAM180BQ6P0A1 224 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 RPS27LQ71UM5 84 aaKnown RBP9.61□□□□□ -0.87
RFFL-209ENST00000581265 LUZP2Q86TE4 346 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 CCDC116Q8IYX3 515 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 SAMD14Q8IZD0 417 aaPredicted RBP9.61□□□□□ -0.87
RFFL-209ENST00000581265 RDH11Q8TC12 318 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 RNF138Q8WVD3 245 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 ANP32BQ92688 251 aaKnown RBP9.61□□□□□ -0.87
RFFL-209ENST00000581265 DTNBP1Q96EV8 351 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 VSTM2LQ96N03 204 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 ADOQ96SZ5 270 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 BEX4Q9NWD9 120 aaPredicted RBP9.61□□□□□ -0.87
RFFL-209ENST00000581265 HEY2Q9UBP5 337 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 NDRG3Q9UGV2 375 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 TRPS1Q9UHF7 1281 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 MCM8Q9UJA3 840 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 ZNF180Q9UJW8 692 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 FBXL2Q9UKC9 423 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 UTS2RQ9UKP6 389 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 PACSIN3Q9UKS6 424 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 DLGAP4Q9Y2H0 992 aa9.61□□□□□ -0.87
RFFL-209ENST00000581265 A8MT66 165 aa9.6□□□□□ -0.87
RFFL-209ENST00000581265 RNF212BA8MTL3 300 aa9.6□□□□□ -0.87
RFFL-209ENST00000581265 MANBAO00462 879 aa9.6□□□□□ -0.87
RFFL-209ENST00000581265 MSTNO14793 375 aa9.6□□□□□ -0.87
RFFL-209ENST00000581265 HCRTR2O43614 444 aa9.6□□□□□ -0.87
RFFL-209ENST00000581265 PLOD3O60568 738 aa9.6□□□□□ -0.87
RFFL-209ENST00000581265 OR4F21O95013 312 aa9.6□□□□□ -0.87
RFFL-209ENST00000581265 TGM6O95932 706 aa9.6□□□□□ -0.87
RFFL-209ENST00000581265 KRT6AP02538 564 aa9.6□□□□□ -0.87
RFFL-209ENST00000581265 KRT6BP04259 564 aa9.6□□□□□ -0.87
RFFL-209ENST00000581265 TSPAN8P19075 237 aa9.6□□□□□ -0.87
RFFL-209ENST00000581265 CPA2P48052 419 aa9.6□□□□□ -0.87
RFFL-209ENST00000581265 KRT6CP48668 564 aa9.6□□□□□ -0.87
RFFL-209ENST00000581265 GAS1P54826 345 aa9.6□□□□□ -0.87
RFFL-209ENST00000581265 DIO3P55073 304 aa9.6□□□□□ -0.87
RFFL-209ENST00000581265 CLCQ05315 142 aa9.6□□□□□ -0.87
RFFL-209ENST00000581265 EFR3AQ14156 821 aa9.6□□□□□ -0.87
RFFL-209ENST00000581265 SHEQ5VZ18 495 aa9.6□□□□□ -0.87
RFFL-209ENST00000581265 C8orf74Q6P047 294 aa9.6□□□□□ -0.87
RFFL-209ENST00000581265 PLXDC2Q6UX71 529 aa9.6□□□□□ -0.87
RFFL-209ENST00000581265 SYT10Q6XYQ8 523 aa9.6□□□□□ -0.87
RFFL-209ENST00000581265 CXorf67Q86X51 503 aaPredicted RBP9.6□□□□□ -0.87
RFFL-209ENST00000581265 KRTAP1-3Q8IUG1 177 aa9.6□□□□□ -0.87
RFFL-209ENST00000581265 GCNT2Q8N0V5 402 aa9.6□□□□□ -0.87
RFFL-209ENST00000581265 GBP7Q8N8V2 638 aaPredicted RBP9.6□□□□□ -0.87
RFFL-209ENST00000581265 SFXN2Q96NB2 322 aa9.6□□□□□ -0.87
RFFL-209ENST00000581265 HBEGFQ99075 208 aa9.6□□□□□ -0.87
RFFL-209ENST00000581265 PAFAH2Q99487 392 aa9.6□□□□□ -0.87
RFFL-209ENST00000581265 CDC42EP4Q9H3Q1 356 aaKnown RBP9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms