RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 GGT5P36269 586 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 SERPINB9P50453 376 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 CTBP2P56545 445 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 TAS2R39P59534 338 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 RAB10P61026 200 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 VLDLRP98155 873 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 BCL2A1Q16548 175 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 SGCBQ16585 318 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 PPP1R3AQ16821 1122 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 C18orf63Q68DL7 685 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 OR4C11Q6IEV9 310 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 ADNP2Q6IQ32 1131 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 TRMT10CQ7L0Y3 403 aaKnown RBP9.97□□□□□ -0.81
VPS53-207ENST00000570510 FAM214BQ7L5A3 538 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 VN1R5Q7Z5H4 357 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 STK32CQ86UX6 486 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 LCA5Q86VQ0 697 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 PLCZ1Q86YW0 608 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 GALNT12Q8IXK2 581 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 ARIH2OSQ8N7S6 290 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 RHEBL1Q8TAI7 183 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 RAB3IL1Q8TBN0 382 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 FIG4Q92562 907 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 TMEM204Q9BSN7 226 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 STMN4Q9H169 189 aaPredicted RBP9.97□□□□□ -0.81
VPS53-207ENST00000570510 OR10A5Q9H207 317 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 EHD1Q9H4M9 534 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 ZNF180Q9UJW8 692 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 GDF2Q9UK05 429 aaPredicted RBP9.97□□□□□ -0.81
VPS53-207ENST00000570510 SNX8Q9Y5X2 465 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 PSAT1Q9Y617 370 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 CR1P17927 2039 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 IGHV4-30-2A0A087WSY4 118 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 PRAMEF25A6NGN4 478 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 SEC14L5O43304 696 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 KIAA0513O60268 411 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 NDUFS7O75251 213 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 TBX6O95947 436 aaPredicted RBP9.96□□□□□ -0.82
VPS53-207ENST00000570510 SLC35E2BP0CK96 405 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 SLC35E2P0CK97 266 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 FCGR2AP12318 317 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 ZNF16P17020 682 aaPredicted RBP9.96□□□□□ -0.82
VPS53-207ENST00000570510 NAGAP17050 411 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 CFPP27918 469 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 PGGT1BP53609 377 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 RPS3AP61247 264 aaKnown RBP9.96□□□□□ -0.82
VPS53-207ENST00000570510 TNFRSF17Q02223 184 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 IRF8Q02556 426 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 PLCXD2Q0VAA5 305 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 DOC2AQ14183 400 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 NNATQ16517 81 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 C18orf21Q32NC0 220 aaPredicted RBP9.96□□□□□ -0.82
VPS53-207ENST00000570510 HP1BP3Q5SSJ5 553 aaPredicted RBP9.96□□□□□ -0.82
VPS53-207ENST00000570510 LGSNQ5TDP6 509 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 FAM166AQ6J272 317 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 ADAM5Q6NVV9 412 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 IL17RELQ6ZVW7 336 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 UBE3DQ7Z6J8 389 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 MED12LQ86YW9 2145 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 NOA1Q8NC60 698 aaKnown RBP9.96□□□□□ -0.82
VPS53-207ENST00000570510 FNDC9Q8TBE3 224 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 STAG3L4Q8TBR4 150 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 FBF1Q8TES7 1133 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 GFM2Q969S9 779 aaKnown RBP9.96□□□□□ -0.82
VPS53-207ENST00000570510 UBE2E3Q969T4 207 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 RGMAQ96B86 450 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 TMCO6Q96DC7 493 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 CMTM7Q96FZ5 175 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 NMRAL1Q9HBL8 299 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 CTNNAL1Q9UBT7 734 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 DMGDHQ9UI17 866 aaKnown RBP9.96□□□□□ -0.82
VPS53-207ENST00000570510 ZNF490Q9ULM2 529 aaPredicted RBP9.96□□□□□ -0.82
VPS53-207ENST00000570510 TMCO1Q9UM00 188 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 CFL2Q9Y281 166 aa9.96□□□□□ -0.82
VPS53-207ENST00000570510 MED12Q93074 2177 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 SYCE1LA8MT33 242 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 TCF21O43680 179 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 TNFRSF21O75509 655 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 PRKRAO75569 313 aaKnown RBP9.95□□□□□ -0.82
VPS53-207ENST00000570510 DANCRP0C864 163 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 NR2F6P10588 404 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 COL6A2P12110 1019 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 SLC25A16P16260 332 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 PIK3R1P27986 724 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 GALNSP34059 522 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 DEKP35659 375 aaKnown RBP9.95□□□□□ -0.82
VPS53-207ENST00000570510 SLC7A5Q01650 507 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 LOXL1Q08397 574 aaPredicted RBP9.95□□□□□ -0.82
VPS53-207ENST00000570510 DDX39BQ13838 428 aaKnown RBP9.95□□□□□ -0.82
VPS53-207ENST00000570510 PON3Q15166 354 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 KCTD19Q17RG1 926 aaPredicted RBP9.95□□□□□ -0.82
VPS53-207ENST00000570510 ZNF672Q499Z4 452 aaPredicted RBP9.95□□□□□ -0.82
VPS53-207ENST00000570510 FAM120AOSQ5T036 256 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 RAET1LQ5VY80 246 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 OR5M10Q6IEU7 315 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 SULT1C3Q6IMI6 304 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 TMEM81Q6P7N7 255 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 CYP20A1Q6UW02 462 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 STAC2Q6ZMT1 411 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 BEND4Q6ZU67 534 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms