RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 BCDIN3DQ7Z5W3 292 aaKnown RBP18.97■□□□□ 0.63
CLN3-230ENST00000568076 MEX3DQ86XN8 651 aaKnown RBP18.97■□□□□ 0.63
CLN3-230ENST00000568076 SLC9A6Q92581 669 aa18.97■□□□□ 0.63
CLN3-230ENST00000568076 RSC1A1Q92681 617 aa18.97■□□□□ 0.63
CLN3-230ENST00000568076 ARMC7Q9H6L4 198 aa18.97■□□□□ 0.63
CLN3-230ENST00000568076 LYRM4Q9HD34 91 aa18.97■□□□□ 0.63
CLN3-230ENST00000568076 WSB2Q9NYS7 404 aaPredicted RBP18.97■□□□□ 0.63
CLN3-230ENST00000568076 DUXAA6NLW8 204 aa18.97■□□□□ 0.63
CLN3-230ENST00000568076 ZSCAN9O15535 394 aaPredicted RBP18.97■□□□□ 0.63
CLN3-230ENST00000568076 FGF17O60258 216 aa18.97■□□□□ 0.63
CLN3-230ENST00000568076 LDB3O75112 727 aa18.97■□□□□ 0.63
CLN3-230ENST00000568076 PORP16435 677 aaPredicted RBP18.97■□□□□ 0.63
CLN3-230ENST00000568076 ZNF10P21506 573 aaPredicted RBP18.97■□□□□ 0.63
CLN3-230ENST00000568076 HOXC5Q00444 222 aa18.97■□□□□ 0.63
CLN3-230ENST00000568076 DUSP5Q16690 384 aa18.97■□□□□ 0.63
CLN3-230ENST00000568076 DGUOKQ16854 277 aa18.97■□□□□ 0.63
CLN3-230ENST00000568076 ZNF628Q5EBL2 1059 aa18.97■□□□□ 0.63
CLN3-230ENST00000568076 FHL5Q5TD97 284 aa18.97■□□□□ 0.63
CLN3-230ENST00000568076 PLAG1Q6DJT9 500 aa18.97■□□□□ 0.63
CLN3-230ENST00000568076 OR52P1PQ8NH57 321 aa18.97■□□□□ 0.63
CLN3-230ENST00000568076 DIO2Q92813 273 aa18.97■□□□□ 0.63
CLN3-230ENST00000568076 SLC6A18Q96N87 628 aa18.97■□□□□ 0.63
CLN3-230ENST00000568076 OR5M11Q96RB7 305 aa18.97■□□□□ 0.63
CLN3-230ENST00000568076 ORAI3Q9BRQ5 295 aa18.97■□□□□ 0.63
CLN3-230ENST00000568076 SLIRPQ9GZT3 109 aaKnown RBP18.97■□□□□ 0.63
CLN3-230ENST00000568076 IL21RQ9HBE5 538 aa18.97■□□□□ 0.63
CLN3-230ENST00000568076 ZBTB20Q9HC78 741 aaPredicted RBP18.97■□□□□ 0.63
CLN3-230ENST00000568076 PRDM9Q9NQV7 894 aa18.97■□□□□ 0.63
CLN3-230ENST00000568076 SEMA4GQ9NTN9 838 aa18.97■□□□□ 0.63
CLN3-230ENST00000568076 CPSF4LA6NMK7 179 aaKnown RBP18.96■□□□□ 0.63
CLN3-230ENST00000568076 CYR61O00622 381 aa18.96■□□□□ 0.63
CLN3-230ENST00000568076 MAGEB3O15480 346 aa18.96■□□□□ 0.63
CLN3-230ENST00000568076 AIREO43918 545 aa18.96■□□□□ 0.63
CLN3-230ENST00000568076 ACP2P11117 423 aa18.96■□□□□ 0.63
CLN3-230ENST00000568076 PIPP12273 146 aaPredicted RBP18.96■□□□□ 0.63
CLN3-230ENST00000568076 PRKAR1BP31321 381 aa18.96■□□□□ 0.63
CLN3-230ENST00000568076 TAS2R41P59536 307 aa18.96■□□□□ 0.63
CLN3-230ENST00000568076 ARMCX4Q5H9R4 360 aa18.96■□□□□ 0.63
CLN3-230ENST00000568076 CASP12Q6UXS9 341 aa18.96■□□□□ 0.63
CLN3-230ENST00000568076 BTLAQ7Z6A9 289 aa18.96■□□□□ 0.63
CLN3-230ENST00000568076 KIF18BQ86Y91 864 aa18.96■□□□□ 0.63
CLN3-230ENST00000568076 CACTIN-AS1Q8N1I8 211 aa18.96■□□□□ 0.63
CLN3-230ENST00000568076 LINC00471Q8N535 108 aa18.96■□□□□ 0.63
CLN3-230ENST00000568076 TCEANCQ8N8B7 351 aa18.96■□□□□ 0.63
CLN3-230ENST00000568076 CRELD1Q96HD1 420 aa18.96■□□□□ 0.63
CLN3-230ENST00000568076 AKIP1Q9NQ31 210 aa18.96■□□□□ 0.63
CLN3-230ENST00000568076 PTGFRNQ9P2B2 879 aa18.96■□□□□ 0.63
CLN3-230ENST00000568076 OSGIN1Q9UJX0 560 aa18.96■□□□□ 0.63
CLN3-230ENST00000568076 OR5K4A6NMS3 321 aa18.95■□□□□ 0.62
CLN3-230ENST00000568076 CYP7B1O75881 506 aa18.95■□□□□ 0.62
CLN3-230ENST00000568076 CTSBP07858 339 aa18.95■□□□□ 0.62
CLN3-230ENST00000568076 AVPR1BP47901 424 aa18.95■□□□□ 0.62
CLN3-230ENST00000568076 NDUFA9Q16795 377 aa18.95■□□□□ 0.62
CLN3-230ENST00000568076 ENTPD8Q5MY95 495 aa18.95■□□□□ 0.62
CLN3-230ENST00000568076 TYW3Q6IPR3 259 aaKnown RBP18.95■□□□□ 0.62
CLN3-230ENST00000568076 C16orf87Q6PH81 154 aa18.95■□□□□ 0.62
CLN3-230ENST00000568076 OR8J1Q8NGP2 316 aa18.95■□□□□ 0.62
CLN3-230ENST00000568076 C9orf43Q8TAL5 461 aaPredicted RBP18.95■□□□□ 0.62
CLN3-230ENST00000568076 PLA2G12AQ9BZM1 189 aa18.95■□□□□ 0.62
CLN3-230ENST00000568076 STARD5Q9NSY2 213 aa18.95■□□□□ 0.62
CLN3-230ENST00000568076 TVP23BQ9NYZ1 205 aa18.95■□□□□ 0.62
CLN3-230ENST00000568076 NTNG1Q9Y2I2 539 aa18.95■□□□□ 0.62
CLN3-230ENST00000568076 CENPVL1A0A0U1RR11 272 aa18.95■□□□□ 0.62
CLN3-230ENST00000568076 OR5K3A6NET4 321 aa18.95■□□□□ 0.62
CLN3-230ENST00000568076 PRKYO43930 277 aa18.95■□□□□ 0.62
CLN3-230ENST00000568076 TYRP1P17643 537 aa18.95■□□□□ 0.62
CLN3-230ENST00000568076 CLK1P49759 484 aaKnown RBP18.95■□□□□ 0.62
CLN3-230ENST00000568076 SHC2P98077 582 aa18.95■□□□□ 0.62
CLN3-230ENST00000568076 CDK5Q00535 292 aa18.95■□□□□ 0.62
CLN3-230ENST00000568076 TMED1Q13445 227 aa18.95■□□□□ 0.62
CLN3-230ENST00000568076 ACSM5Q6NUN0 579 aa18.95■□□□□ 0.62
CLN3-230ENST00000568076 Q6ZNX1 250 aa18.95■□□□□ 0.62
CLN3-230ENST00000568076 ZNF367Q7RTV3 350 aa18.95■□□□□ 0.62
CLN3-230ENST00000568076 PRICKLE2Q7Z3G6 844 aa18.95■□□□□ 0.62
CLN3-230ENST00000568076 ADCK1Q86TW2 530 aa18.95■□□□□ 0.62
CLN3-230ENST00000568076 IGFN1Q86VF2 1251 aa18.95■□□□□ 0.62
CLN3-230ENST00000568076 FAM160A2Q8N612 972 aaPredicted RBP18.95■□□□□ 0.62
CLN3-230ENST00000568076 CSNK1A1LQ8N752 337 aa18.95■□□□□ 0.62
CLN3-230ENST00000568076 B4GALNT2Q8NHY0 566 aa18.95■□□□□ 0.62
CLN3-230ENST00000568076 RLN3Q8WXF3 142 aa18.95■□□□□ 0.62
CLN3-230ENST00000568076 ZHX1-C8orf76Q96EF9 292 aa18.95■□□□□ 0.62
CLN3-230ENST00000568076 PALMDQ9NP74 551 aa18.95■□□□□ 0.62
CLN3-230ENST00000568076 SLC13A4Q9UKG4 626 aa18.95■□□□□ 0.62
CLN3-230ENST00000568076 C19orf53Q9UNZ5 99 aaPredicted RBP18.95■□□□□ 0.62
CLN3-230ENST00000568076 A0A1W2PPC4 97 aa18.94■□□□□ 0.62
CLN3-230ENST00000568076 GALR3O60755 368 aaPredicted RBP18.94■□□□□ 0.62
CLN3-230ENST00000568076 CNOT3O75175 753 aaKnown RBP18.94■□□□□ 0.62
CLN3-230ENST00000568076 THY1P04216 161 aa18.94■□□□□ 0.62
CLN3-230ENST00000568076 HSMCR30P0CW71 290 aa18.94■□□□□ 0.62
CLN3-230ENST00000568076 CHRNB1P11230 501 aa18.94■□□□□ 0.62
CLN3-230ENST00000568076 CTSEP14091 401 aa18.94■□□□□ 0.62
CLN3-230ENST00000568076 IGFBP4P22692 258 aa18.94■□□□□ 0.62
CLN3-230ENST00000568076 GIPRP48546 466 aa18.94■□□□□ 0.62
CLN3-230ENST00000568076 RGS6P49758 472 aa18.94■□□□□ 0.62
CLN3-230ENST00000568076 LIMK1P53667 647 aa18.94■□□□□ 0.62
CLN3-230ENST00000568076 VSX2P58304 361 aaPredicted RBP18.94■□□□□ 0.62
CLN3-230ENST00000568076 HHEXQ03014 270 aa18.94■□□□□ 0.62
CLN3-230ENST00000568076 GINS1Q14691 196 aa18.94■□□□□ 0.62
CLN3-230ENST00000568076 NR1D2Q14995 579 aa18.94■□□□□ 0.62
CLN3-230ENST00000568076 ARHGAP11BQ3KRB8 267 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms