RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 LINC00471Q8N535 108 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 OR52I1Q8NGK6 324 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 RAB8BQ92930 207 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 KIAA1143Q96AT1 154 aaPredicted RBP12.46□□□□□ -0.41
VPS4A-204ENST00000566354 COQ10AQ96MF6 247 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 MMP28Q9H239 520 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 MIXL1Q9H2W2 232 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 SLAMF7Q9NQ25 335 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 C12orf4Q9NQ89 552 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 SEC14L3Q9UDX4 400 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 PLEKHB1Q9UF11 243 aaPredicted RBP12.46□□□□□ -0.41
VPS4A-204ENST00000566354 TESQ9UGI8 421 aaKnown RBP12.46□□□□□ -0.41
VPS4A-204ENST00000566354 A0A1W2PRQ8 180 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 A6NL46 340 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 HMGN4O00479 90 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 YKT6O15498 198 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 PRKYO43930 277 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 ICMTO60725 284 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 LILRB5O75023 590 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 CSF3P09919 207 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 GIPRP48546 466 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 SLAMF1Q13291 335 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 SPDYE7PQ495Y7 208 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 SYT14P1Q58G82 188 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 PRAMEF14Q5SWL7 426 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 PRAMEF13Q5VWM6 474 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 IDO2Q6ZQW0 420 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 TRMT11Q7Z4G4 463 aaKnown RBP12.46□□□□□ -0.41
VPS4A-204ENST00000566354 LAPTM4BQ86VI4 370 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 TRAPPC5Q8IUR0 188 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 VWA5B2Q8N398 1253 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 SLC7A6Q92536 515 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 DTD2Q96FN9 168 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 DMRTB1Q96MA1 342 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 KCTD7Q96MP8 289 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 TMEM246Q9BRR3 403 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 CD93Q9NPY3 652 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 TNFRSF10DQ9UBN6 386 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 A8MV72 311 aaPredicted RBP12.45□□□□□ -0.42
VPS4A-204ENST00000566354 PLPP1O14494 284 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 ALX3O95076 343 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 YES1P07947 543 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 TSPAN19P0C672 248 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 MYL12AP19105 171 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 ETV5P41161 510 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 ETV1P50549 477 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 TAGLNQ01995 201 aaKnown RBP12.45□□□□□ -0.42
VPS4A-204ENST00000566354 PLK5Q496M5 336 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 TMEM52BQ4KMG9 183 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 C3orf38Q5JPI3 329 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 C22orf42Q6IC83 251 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 LCTLQ6UWM7 567 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 FAM129CQ86XR2 697 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 ADGRF3Q8IZF5 1079 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 OR4D11Q8NGI4 311 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 GANCQ8TET4 914 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 SMPDL3AQ92484 453 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 AP3S1Q92572 193 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 RAB7BQ96AH8 199 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 TM4SF18Q96CE8 201 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 MSANTD3Q96H12 275 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 LRR1Q96L50 414 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 OR2AG1Q9H205 316 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 RYDENQ9NUL5 291 aaKnown RBP12.45□□□□□ -0.42
VPS4A-204ENST00000566354 A4GNTQ9UNA3 340 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 SPIN1Q9Y657 262 aaPredicted RBP12.45□□□□□ -0.42
VPS4A-204ENST00000566354 C17orf113A0A1B0GUU1 675 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 IRGMA1A4Y4 181 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 K7ESM1 405 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 POLR1CO15160 346 aaPredicted RBP12.45□□□□□ -0.42
VPS4A-204ENST00000566354 LZTS3O60299 673 aaPredicted RBP12.45□□□□□ -0.42
VPS4A-204ENST00000566354 ALPPP05187 535 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 NR2F6P10588 404 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 ACADMP11310 421 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 WNT4P56705 351 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 PCBP4P57723 403 aaKnown RBP12.45□□□□□ -0.42
VPS4A-204ENST00000566354 PIN1Q13526 163 aaPredicted RBP12.45□□□□□ -0.42
VPS4A-204ENST00000566354 GINS1Q14691 196 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 GPAT3Q53EU6 434 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 TJAP1Q5JTD0 557 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 KHDRBS2Q5VWX1 349 aaKnown RBP12.45□□□□□ -0.42
VPS4A-204ENST00000566354 PODNL1Q6PEZ8 512 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 IQCF1Q8N6M8 205 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 CXorf40AQ8TE69 158 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 TMEM203Q969S6 136 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 FRMD6Q96NE9 622 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 ZNF582Q96NG8 517 aaPredicted RBP12.45□□□□□ -0.42
VPS4A-204ENST00000566354 TREX2Q9BQ50 279 aaPredicted RBP12.45□□□□□ -0.42
VPS4A-204ENST00000566354 FNDC11Q9BVV2 318 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 C11orf54Q9H0W9 315 aaPredicted RBP12.45□□□□□ -0.42
VPS4A-204ENST00000566354 RHBGQ9H310 441 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 DPEP2Q9H4A9 486 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 SLA2Q9H6Q3 261 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 MVB12BQ9H7P6 319 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 SCPEP1Q9HB40 452 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 ISYNA1Q9NPH2 558 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 DIABLOQ9NR28 239 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 MRPS18AQ9NVS2 196 aaKnown RBP12.45□□□□□ -0.42
VPS4A-204ENST00000566354 ZSCAN32Q9NX65 697 aa12.45□□□□□ -0.42
VPS4A-204ENST00000566354 PAQR5Q9NXK6 330 aaPredicted RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms