RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 TNFRSF12AQ9NP84 129 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 DNAJB12Q9NXW2 375 aaKnown RBP9.31□□□□□ -0.92
LDLR-214ENST00000560628 CRIM1Q9NZV1 1036 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 FETUBQ9UGM5 382 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 POLR3HQ9Y535 204 aaPredicted RBP9.31□□□□□ -0.92
LDLR-214ENST00000560628 MED12Q93074 2177 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 CCDC168Q8NDH2 2452 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 OR6C70A6NIJ9 312 aa9.3□□□□□ -0.92
LDLR-214ENST00000560628 CD8B2A6NJW9 211 aa9.3□□□□□ -0.92
LDLR-214ENST00000560628 C17orf51A8MQB3 221 aa9.3□□□□□ -0.92
LDLR-214ENST00000560628 TSPAN2O60636 221 aa9.3□□□□□ -0.92
LDLR-214ENST00000560628 GLRA3O75311 464 aa9.3□□□□□ -0.92
LDLR-214ENST00000560628 CTAG2O75638 210 aa9.3□□□□□ -0.92
LDLR-214ENST00000560628 ACTL6AO96019 429 aa9.3□□□□□ -0.92
LDLR-214ENST00000560628 JUNP05412 331 aaKnown RBP9.3□□□□□ -0.92
LDLR-214ENST00000560628 CYP4B1P13584 511 aa9.3□□□□□ -0.92
LDLR-214ENST00000560628 DDCP20711 480 aa9.3□□□□□ -0.92
LDLR-214ENST00000560628 IL12BP29460 328 aa9.3□□□□□ -0.92
LDLR-214ENST00000560628 KRT20P35900 424 aa9.3□□□□□ -0.92
LDLR-214ENST00000560628 NCBP2P52298 156 aaKnown RBP eCLIP9.3□□□□□ -0.92
LDLR-214ENST00000560628 SF3B4Q15427 424 aaKnown RBP eCLIP9.3□□□□□ -0.925e-18■■■■□ 24.6
LDLR-214ENST00000560628 SH2D4BQ5SQS7 431 aa9.3□□□□□ -0.92
LDLR-214ENST00000560628 TMEM81Q6P7N7 255 aa9.3□□□□□ -0.92
LDLR-214ENST00000560628 PLCZ1Q86YW0 608 aa9.3□□□□□ -0.92
LDLR-214ENST00000560628 SAMD14Q8IZD0 417 aaPredicted RBP9.3□□□□□ -0.92
LDLR-214ENST00000560628 FAM9CQ8IZT9 166 aa9.3□□□□□ -0.92
LDLR-214ENST00000560628 CCDC63Q8NA47 563 aa9.3□□□□□ -0.92
LDLR-214ENST00000560628 C9orf106Q8NAJ2 232 aa9.3□□□□□ -0.92
LDLR-214ENST00000560628 RNASE6Q93091 150 aaKnown RBP9.3□□□□□ -0.92
LDLR-214ENST00000560628 EFHD2Q96C19 240 aaPredicted RBP9.3□□□□□ -0.92
LDLR-214ENST00000560628 CCDC126Q96EE4 140 aa9.3□□□□□ -0.92
LDLR-214ENST00000560628 BTBD9Q96Q07 612 aa9.3□□□□□ -0.92
LDLR-214ENST00000560628 TUBA1CQ9BQE3 449 aa9.3□□□□□ -0.92
LDLR-214ENST00000560628 GPATCH1Q9BRR8 931 aaKnown RBP9.3□□□□□ -0.92
LDLR-214ENST00000560628 POLDIP3Q9BY77 421 aaKnown RBP9.3□□□□□ -0.92
LDLR-214ENST00000560628 CALHM2Q9HA72 323 aa9.3□□□□□ -0.92
LDLR-214ENST00000560628 TAS2R10Q9NYW0 307 aa9.3□□□□□ -0.92
LDLR-214ENST00000560628 SENP1Q9P0U3 644 aa9.3□□□□□ -0.92
LDLR-214ENST00000560628 ZNF629Q9UEG4 869 aaPredicted RBP9.3□□□□□ -0.92
LDLR-214ENST00000560628 FBXL2Q9UKC9 423 aa9.3□□□□□ -0.92
LDLR-214ENST00000560628 GRID1Q9ULK0 1009 aa9.3□□□□□ -0.92
LDLR-214ENST00000560628 RPH3AQ9Y2J0 694 aaPredicted RBP9.3□□□□□ -0.92
LDLR-214ENST00000560628 OR10H1Q9Y4A9 318 aa9.3□□□□□ -0.92
LDLR-214ENST00000560628 CSMD2Q7Z408 3487 aa9.3□□□□□ -0.92
LDLR-214ENST00000560628 TEP1Q99973 2627 aaKnown RBP9.3□□□□□ -0.92
LDLR-214ENST00000560628 SPG11Q96JI7 2443 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 SERTM1A2A2V5 107 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 MYO1GB0I1T2 1018 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 EEF1E1-BLOC1S5C9J1V9 151 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 H0Y3Z8 333 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 EEF1E1O43324 174 aaKnown RBP9.29□□□□□ -0.92
LDLR-214ENST00000560628 PLOD3O60568 738 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 PLIN3O60664 434 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 ABCB7O75027 752 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 CPA3P15088 417 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 CPN1P15169 458 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 GRK2P25098 689 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 CTSSP25774 331 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 DNAJA1P31689 397 aaKnown RBP9.29□□□□□ -0.92
LDLR-214ENST00000560628 CRHR1P34998 444 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 GCKP35557 465 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 MC3RP41968 323 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 CCT5P48643 541 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 ASCL1P50553 236 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 DGKQP52824 942 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 ART1P52961 327 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 ZNF763Q0D2J5 394 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 ZNF155Q12901 538 aaPredicted RBP9.29□□□□□ -0.92
LDLR-214ENST00000560628 FOXF2Q12947 444 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 EFR3AQ14156 821 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 RCAN2Q14206 197 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 CEBPEQ15744 281 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 CLEC6AQ6EIG7 209 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 FAM71E1Q6IPT2 247 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 NOXRED1Q6NXP6 359 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 TMEM107Q6UX40 140 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 FRMD7Q6ZUT3 714 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 TRIM46Q7Z4K8 759 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 ZPLD1Q8TCW7 415 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 GFM2Q969S9 779 aaKnown RBP9.29□□□□□ -0.92
LDLR-214ENST00000560628 ERP27Q96DN0 273 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 LRRC46Q96FV0 321 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 SLC35A4Q96G79 324 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 EGLN2Q96KS0 407 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 SH3GL2Q99962 352 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 OR2B2Q9GZK3 357 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 LIME1Q9H400 295 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 MIEF1Q9NQG6 463 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 RRAGDQ9NQL2 400 aaPredicted RBP9.29□□□□□ -0.92
LDLR-214ENST00000560628 SIRT5Q9NXA8 310 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 TAS2R9Q9NYW1 312 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 PTGDR2Q9Y5Y4 395 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 OTOGQ6ZRI0 2925 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 F8P00451 2351 aa9.29□□□□□ -0.92
LDLR-214ENST00000560628 KIAA1549Q9HCM3 1950 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 MBD3L4A6NDZ8 208 aaPredicted RBP9.28□□□□□ -0.92
LDLR-214ENST00000560628 MBD3L3A6NE82 208 aaPredicted RBP9.28□□□□□ -0.92
LDLR-214ENST00000560628 MBD3L5A6NJ08 208 aaPredicted RBP9.28□□□□□ -0.92
LDLR-214ENST00000560628 B4DXG7 233 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 COPEO14579 308 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms