RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 CLEC18CQ8NCF0 446 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 FAM13CQ8NE31 585 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 OR2M7Q8NG81 312 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 PIWIL2Q8TC59 973 aaKnown RBP8.61□□□□□ -1.03
LDLR-211ENST00000560173 COQ8BQ96D53 544 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 OMA1Q96E52 524 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 MAELQ96JY0 434 aaKnown RBP8.61□□□□□ -1.03
LDLR-211ENST00000560173 LRRC37BQ96QE4 947 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 FAM173AQ9BQD7 235 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 TSPAN10Q9H1Z9 355 aaPredicted RBP8.61□□□□□ -1.03
LDLR-211ENST00000560173 WDR55Q9H6Y2 383 aaPredicted RBP8.61□□□□□ -1.03
LDLR-211ENST00000560173 SLCO1B3Q9NPD5 702 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 MRGBPQ9NV56 204 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 ATAD3AQ9NVI7 634 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 AIG1Q9NVV5 245 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 TAS2R9Q9NYW1 312 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 CNIH4Q9P003 139 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 NTMQ9P121 344 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 CNOT11Q9UKZ1 510 aaKnown RBP8.61□□□□□ -1.03
LDLR-211ENST00000560173 ENO4A6NNW6 628 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 CAPN14A8MX76 684 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 NPIPA5E9PKD4 350 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 TP53I11O14683 189 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 GLSO94925 669 aaPredicted RBP8.6□□□□□ -1.03
LDLR-211ENST00000560173 UNC5CO95185 931 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 P04436 131 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 ABCB1P08183 1280 aaPredicted RBP8.6□□□□□ -1.03
LDLR-211ENST00000560173 CNR1P21554 472 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 GPC1P35052 558 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 PIGAP37287 484 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 DNASE1L1P49184 302 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 RASSF2P50749 326 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 KCNK10P57789 538 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 PSPHP78330 225 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 PSG6Q00889 435 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 FOXO1Q12778 655 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 SLC9B1Q4ZJI4 515 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 PRAMEF20Q5VT98 475 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 SLC22A10Q63ZE4 541 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 GK5Q6ZS86 529 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 SPATA19Q7Z5L4 167 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 NATD1Q8N6N6 113 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 OR5M3Q8NGP4 307 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 PSMA8Q8TAA3 256 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 SPPL2AQ8TCT8 520 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 ACTRT2Q8TDY3 377 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 STON2Q8WXE9 905 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 OR5P2Q8WZ92 322 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 HOXB13Q92826 284 aaPredicted RBP8.6□□□□□ -1.03
LDLR-211ENST00000560173 HGDQ93099 445 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 TMBIM1Q969X1 311 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 MAGED4Q96JG8 741 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 GPR137Q96N19 417 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 MS4A4EQ96PG1 132 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 PSMG3-AS1Q96PY0 264 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 SECISBP2Q96T21 854 aaKnown RBP8.6□□□□□ -1.03
LDLR-211ENST00000560173 PRPF18Q99633 342 aaKnown RBP8.6□□□□□ -1.03
LDLR-211ENST00000560173 DUSP26Q9BV47 211 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 DPY30Q9C005 99 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 BHLHE41Q9C0J9 482 aaPredicted RBP8.6□□□□□ -1.03
LDLR-211ENST00000560173 PROK2Q9HC23 129 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 SIRT3Q9NTG7 399 aaPredicted RBP8.6□□□□□ -1.03
LDLR-211ENST00000560173 SEC14L3Q9UDX4 400 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 NPIPA1Q9UND3 350 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 MAPRE3Q9UPY8 281 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 EXPH5Q8NEV8 1989 aa8.6□□□□□ -1.03
LDLR-211ENST00000560173 GIMAP1-GIMAP5A0A087WTJ2 511 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 A0A1W2PRB8 838 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 ANKRD33BA6NCL7 494 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 OR6C70A6NIJ9 312 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 LRRC3CA6NJW4 275 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 FAM166BA8MTA8 275 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 TFECO14948 347 aaPredicted RBP8.59□□□□□ -1.03
LDLR-211ENST00000560173 EMC8O43402 210 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 TSPAN2O60636 221 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 CCDC22O60826 627 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 UGT2B11O75310 529 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 C6orf47O95873 294 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 MAP3K8P41279 467 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 ARFIP2P53365 341 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 CLNS1AP54105 237 aaKnown RBP8.59□□□□□ -1.03
LDLR-211ENST00000560173 WNT3P56703 355 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 KCNJ2P63252 427 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 RPP38P78345 283 aaKnown RBP8.59□□□□□ -1.03
LDLR-211ENST00000560173 ELOAQ14241 798 aaKnown RBP8.59□□□□□ -1.03
LDLR-211ENST00000560173 HYAL4Q2M3T9 481 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 EIF2S3LQ2VIR3 472 aaKnown RBP8.59□□□□□ -1.03
LDLR-211ENST00000560173 KRTCAP3Q53RY4 240 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 CMPK2Q5EBM0 449 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 TBCELQ5QJ74 424 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 BICRALQ6AI39 1079 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 DESI1Q6ICB0 168 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 EPGNQ6UW88 154 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 GFRALQ6UXV0 394 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 BNC2Q6ZN30 1099 aaPredicted RBP8.59□□□□□ -1.03
LDLR-211ENST00000560173 NUP54Q7Z3B4 507 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 WDR53Q7Z5U6 358 aaPredicted RBP8.59□□□□□ -1.03
LDLR-211ENST00000560173 SLC44A2Q8IWA5 706 aaPredicted RBP8.59□□□□□ -1.03
LDLR-211ENST00000560173 NUP43Q8NFH3 380 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 C10orf82Q8WW14 230 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms