RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 GIMAP1-GIMAP5A0A087WTJ2 511 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 ASPDHA6ND91 283 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 A8MVJ9 347 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 WWP2O00308 870 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 FBP2O00757 339 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 HNRNPCL1O60812 293 aaKnown RBP8.54□□□□□ -1.04
LDLR-210ENST00000559340 ITGA10O75578 1167 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 DNAJB5O75953 348 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 NKX2-2O95096 273 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 CLPSP04118 112 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 CELA2AP08217 269 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 ATP6V1C1P21283 382 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 IL12BP29460 328 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 TRHRP34981 398 aaPredicted RBP8.54□□□□□ -1.04
LDLR-210ENST00000559340 SOX11P35716 441 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 CDKN2CP42773 168 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 CRATP43155 626 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 CYB561P49447 251 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 CLK3P49761 638 aaKnown RBP8.54□□□□□ -1.04
LDLR-210ENST00000559340 HLCSP50747 726 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 RASSF2P50749 326 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 POLE2P56282 527 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 POU6F2P78424 691 aaPredicted RBP8.54□□□□□ -1.04
LDLR-210ENST00000559340 C19orf57Q0VDD7 668 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 EFR3AQ14156 821 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 RUNDC3AQ59EK9 446 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 C16orf89Q6UX73 402 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 DLEU7Q6UYE1 221 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 DNAJC14Q6Y2X3 702 aaPredicted RBP8.54□□□□□ -1.04
LDLR-210ENST00000559340 NUP54Q7Z3B4 507 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 METTL25Q8N6Q8 603 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 LSM14AQ8ND56 463 aaKnown RBP8.54□□□□□ -1.04
LDLR-210ENST00000559340 FDCSPQ8NFU4 85 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 OR8J3Q8NGG0 315 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 OR5AK3PQ8NH89 298 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 HAS2Q92819 552 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 HOXB13Q92826 284 aaPredicted RBP8.54□□□□□ -1.04
LDLR-210ENST00000559340 TMEM125Q96AQ2 219 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 RCN3Q96D15 328 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 GIMAP5Q96F15 307 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 WBP1Q96G27 269 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 SGCZQ96LD1 299 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 ANKRD27Q96NW4 1050 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 OR7D2Q96RA2 312 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 SMAD5Q99717 465 aaKnown RBP8.54□□□□□ -1.04
LDLR-210ENST00000559340 NPAS2Q99743 824 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 ECSITQ9BQ95 431 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 G6PC3Q9BUM1 346 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 THUMPD3Q9BV44 507 aaKnown RBP8.54□□□□□ -1.04
LDLR-210ENST00000559340 SPATA9Q9BWV2 254 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 BTBD2Q9BX70 525 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 ITPAQ9BY32 194 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 ZNF552Q9H707 407 aaPredicted RBP8.54□□□□□ -1.04
LDLR-210ENST00000559340 ANKRA2Q9H9E1 313 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 IL1RL2Q9HB29 575 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 CACYBPQ9HB71 228 aaKnown RBP8.54□□□□□ -1.04
LDLR-210ENST00000559340 GPATCH2Q9NW75 528 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 HPF1Q9NWY4 346 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 CALML5Q9NZT1 146 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 MAP10Q9P2G4 905 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 CBLCQ9ULV8 474 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 ERVK-11Q9UQG0 969 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 L3MBTL1Q9Y468 752 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 NPFFR2Q9Y5X5 522 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 DMXL2Q8TDJ6 3036 aa8.54□□□□□ -1.04
LDLR-210ENST00000559340 MASP2O00187 686 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 EBAG9O00559 213 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 PRKNO60260 465 aaPredicted RBP8.53□□□□□ -1.04
LDLR-210ENST00000559340 DPM1O60762 260 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 REM1O75628 298 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 OR2J2O76002 312 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 CT45A8P0DMV1 189 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 CT45A9P0DMV2 189 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 CD46P15529 392 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 GPX2P18283 190 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 ENDOUP21128 410 aaKnown RBP8.53□□□□□ -1.04
LDLR-210ENST00000559340 PTPN6P29350 595 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 SOX18P35713 384 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 MAP3K8P41279 467 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 NUDT2P50583 147 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 PNLIPRP2P54317 469 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 DSTNP60981 165 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 ARG2P78540 354 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 HPCAP84074 193 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 PSG6Q00889 435 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 OC90Q02509 493 aaPredicted RBP8.53□□□□□ -1.04
LDLR-210ENST00000559340 PLCXD2Q0VAA5 305 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 DUSP8Q13202 625 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 KCNAB2Q13303 367 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 GAB1Q13480 694 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 RGNQ15493 299 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 CT45A2Q5DJT8 189 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 FCRLBQ6BAA4 426 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 LINC00696Q6ZRV3 163 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 C16orf62Q7Z3J2 963 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 RETREG3Q86VR2 466 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 RNF130Q86XS8 419 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 SLC30A8Q8IWU4 369 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 ZNF441Q8N8Z8 693 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 TNIP2Q8NFZ5 429 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms