RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 FANCEQ9HB96 536 aa3.96□□□□□ -1.78
SPG11-211ENST00000558561 ZNF160Q9HCG1 818 aa3.96□□□□□ -1.78
SPG11-211ENST00000558561 SYTL2Q9HCH5 934 aa3.96□□□□□ -1.78
SPG11-211ENST00000558561 TRIM36Q9NQ86 728 aa3.96□□□□□ -1.78
SPG11-211ENST00000558561 FARSBQ9NSD9 589 aaKnown RBP3.96□□□□□ -1.78
SPG11-211ENST00000558561 CD274Q9NZQ7 290 aa3.96□□□□□ -1.78
SPG11-211ENST00000558561 TRPC4Q9UBN4 977 aa3.96□□□□□ -1.78
SPG11-211ENST00000558561 C3orf18Q9UK00 162 aa3.96□□□□□ -1.78
SPG11-211ENST00000558561 FBXL4Q9UKA2 621 aa3.96□□□□□ -1.78
SPG11-211ENST00000558561 EMCNQ9ULC0 261 aa3.96□□□□□ -1.78
SPG11-211ENST00000558561 ACOT9Q9Y305 439 aa3.96□□□□□ -1.78
SPG11-211ENST00000558561 RNF11Q9Y3C5 154 aa3.96□□□□□ -1.78
SPG11-211ENST00000558561 UTP20O75691 2785 aaKnown RBP3.96□□□□□ -1.78
SPG11-211ENST00000558561 PRRC2CQ9Y520 2896 aaKnown RBP3.96□□□□□ -1.78
SPG11-211ENST00000558561 TRBC2A0A5B9 178 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 LRIT2A6NDA9 550 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 SMIM23A6NLE4 172 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 EIF4E1BA6NMX2 242 aaKnown RBP3.95□□□□□ -1.78
SPG11-211ENST00000558561 A8MUI8 341 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 SUPT3HB4E1H0 165 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 EIF3FO00303 357 aaPredicted RBP3.95□□□□□ -1.78
SPG11-211ENST00000558561 CLGNO14967 610 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 PIP5K1BO14986 540 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 NDUFS4O43181 175 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 GALR3O60755 368 aaPredicted RBP3.95□□□□□ -1.78
SPG11-211ENST00000558561 SUPT3HO75486 399 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 JTBO76095 146 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 KLHL2O95198 593 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 GBAP04062 536 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 HEXBP07686 556 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 HBQ1P09105 142 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 GSTA2P09210 222 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 TMEM225BP0DP42 221 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 COX6A1P12074 109 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 ALOX12P18054 663 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 MAOAP21397 527 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 FBLP22087 321 aaKnown RBP3.95□□□□□ -1.78
SPG11-211ENST00000558561 MMP11P24347 488 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 HSD17B2P37059 387 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 MSH2P43246 934 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 XCR1P46094 333 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 UQCRFS1P47985 274 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 CCR8P51685 355 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 PLA2G16P53816 162 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 PMS2P54278 862 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 SLC12A2P55011 1212 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 ELLP55199 621 aaPredicted RBP3.95□□□□□ -1.78
SPG11-211ENST00000558561 VSNL1P62760 191 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 HOXA4Q00056 320 aaPredicted RBP3.95□□□□□ -1.78
SPG11-211ENST00000558561 CDKL1Q00532 357 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 REEP5Q00765 189 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 RHAGQ02094 409 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 RELAQ04206 551 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 CDC16Q13042 620 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 SMN1Q16637 294 aaKnown RBP3.95□□□□□ -1.78
SPG11-211ENST00000558561 SGO1Q5FBB7 561 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 XKR6Q5GH73 641 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 TECRLQ5HYJ1 363 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 TCTE1Q5JU00 501 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 CES4AQ5XG92 561 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 SULT1C3Q6IMI6 304 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 FAM180BQ6P0A1 224 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 TMEM205Q6UW68 189 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 ANKRD37Q7Z713 158 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 CUZD1Q86UP6 607 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP3.95□□□□□ -1.78
SPG11-211ENST00000558561 KLHDC8AQ8IYD2 350 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 MMP21Q8N119 569 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 GALNT16Q8N428 558 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 CEP112Q8N8E3 955 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 LSM14AQ8ND56 463 aaKnown RBP3.95□□□□□ -1.78
SPG11-211ENST00000558561 OR52B6Q8NGF0 335 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 C9orf43Q8TAL5 461 aaPredicted RBP3.95□□□□□ -1.78
SPG11-211ENST00000558561 ZNF473Q8WTR7 871 aaKnown RBP3.95□□□□□ -1.78
SPG11-211ENST00000558561 CCT6BQ92526 530 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 PMM1Q92871 262 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 PPWD1Q96BP3 646 aaKnown RBP3.95□□□□□ -1.78
SPG11-211ENST00000558561 MS4A6EQ96DS6 147 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 TRIM44Q96DX7 344 aaPredicted RBP3.95□□□□□ -1.78
SPG11-211ENST00000558561 TMEM41AQ96HV5 264 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 FMO2Q99518 471 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 MAPKAP1Q9BPZ7 522 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 CRB3Q9BUF7 120 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 EFHD1Q9BUP0 239 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 SLC25A23Q9BV35 468 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 RAB11FIP5Q9BXF6 653 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 HES7Q9BYE0 225 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 SHCBP1LQ9BZQ2 653 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 SLC26A1Q9H2B4 701 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 NOL11Q9H8H0 719 aaKnown RBP3.95□□□□□ -1.78
SPG11-211ENST00000558561 DNAJC11Q9NVH1 559 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 ANKRD10Q9NXR5 420 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 WWOXQ9NZC7 414 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 PTGFRNQ9P2B2 879 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 ZNF282Q9UDV7 671 aaPredicted RBP3.95□□□□□ -1.78
SPG11-211ENST00000558561 LRCH1Q9Y2L9 728 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 PCNX1Q96RV3 2341 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 NCKAP5O14513 1909 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 DOPEY2Q9Y3R5 2298 aa3.95□□□□□ -1.78
SPG11-211ENST00000558561 MED12Q93074 2177 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms