RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 PCDHGB4Q9UN71 923 aa12.5□□□□□ -0.41
SHMT2-228ENST00000557302 CHCHD2Q9Y6H1 151 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-228ENST00000557302 SHANK1Q9Y566 2161 aa12.5□□□□□ -0.41
SHMT2-228ENST00000557302 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 A0A0G2JMM0 328 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 PRSS51A0A1B0GVH4 220 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 A0A1W2PPB8 328 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 A0A1W2PRS3 328 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 KIR3DP1A8MWS1 328 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 DYNC1I1O14576 645 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 REM1O75628 298 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 SLC22A3O75751 556 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 WISP1O95388 367 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 EDN3P14138 238 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 PIGAP37287 484 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 RFC3P40938 356 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 DNASE1L1P49184 302 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 CCT3P49368 545 aaKnown RBP12.49□□□□□ -0.41
SHMT2-228ENST00000557302 WNT3P56703 355 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 STX1BP61266 288 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 KCNJ2P63252 427 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 HBA1P69905 142 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 GUCY1A3Q02108 690 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 PLGLB1Q02325 96 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 CYP27C1Q4G0S4 372 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 TBCELQ5QJ74 424 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 PRAMEF20Q5VT98 475 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 NUP54Q7Z3B4 507 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 WDR53Q7Z5U6 358 aaPredicted RBP12.49□□□□□ -0.41
SHMT2-228ENST00000557302 CLECL1Q8IZS7 167 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 MIER2Q8N344 545 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 CDRT4Q8N9R6 151 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 ST6GALNAC3Q8NDV1 305 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 OR2M7Q8NG81 312 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 SPPL2AQ8TCT8 520 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 SFXN5Q8TD22 340 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 GIMAP5Q96F15 307 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 THOC1Q96FV9 657 aaKnown RBP12.49□□□□□ -0.41
SHMT2-228ENST00000557302 COL21A1Q96P44 957 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 SIKE1Q9BRV8 207 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 CXorf36Q9H7Y0 433 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 NPHS2Q9NP85 383 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 SDR39U1Q9NRG7 319 aaPredicted RBP12.49□□□□□ -0.41
SHMT2-228ENST00000557302 FAM120CQ9NX05 1096 aaKnown RBP12.49□□□□□ -0.41
SHMT2-228ENST00000557302 ZIM2Q9NZV7 527 aa12.49□□□□□ -0.41
SHMT2-228ENST00000557302 CNOT11Q9UKZ1 510 aaKnown RBP12.49□□□□□ -0.41
SHMT2-228ENST00000557302 SVILO95425 2214 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 PINLYPA6NC86 204 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 ANKRD33BA6NCL7 494 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 ANKUB1A6NFN9 424 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 OR6C70A6NIJ9 312 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 C9JVG2 144 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 TFECO14948 347 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-228ENST00000557302 SCN2BO60939 215 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 UGT2B11O75310 529 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 CPSF4O95639 269 aaKnown RBP12.48□□□□□ -0.41
SHMT2-228ENST00000557302 GNLYP22749 145 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 MST1P26927 711 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 IL12AP29459 219 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 IL12BP29460 328 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 GABRA3P34903 492 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 SOAT1P35610 550 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 PRIM2P49643 509 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 TDGF1P3P51864 188 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 DGKQP52824 942 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 PHC1P78364 1004 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 MRPS22P82650 360 aaKnown RBP12.48□□□□□ -0.41
SHMT2-228ENST00000557302 GAB1Q13480 694 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 TP53BP2Q13625 1128 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 EFR3AQ14156 821 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 ELOAQ14241 798 aaKnown RBP12.48□□□□□ -0.41
SHMT2-228ENST00000557302 DECR1Q16698 335 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 RNFT1Q5M7Z0 435 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 MFSD12Q6NUT3 480 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 ZCCHC12Q6PEW1 402 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 BHLHB9Q6PI77 547 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 ANKRD46Q86W74 232 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 OR4N2Q8NGD1 307 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 OR4A15Q8NGL6 344 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 FBXO30Q8TB52 745 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 GPR151Q8TDV0 419 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 STON2Q8WXE9 905 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 SLC9A6Q92581 669 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 HGDQ93099 445 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 TMCO6Q96DC7 493 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 SLC35A4Q96G79 324 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 ADOQ96SZ5 270 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 DOHHQ9BU89 302 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 TSPAN10Q9H1Z9 355 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-228ENST00000557302 METTL7AQ9H8H3 244 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 TUBA8Q9NY65 449 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-228ENST00000557302 DCTN4Q9UJW0 460 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 MRTO4Q9UKD2 239 aaKnown RBP12.48□□□□□ -0.41
SHMT2-228ENST00000557302 CBLCQ9ULV8 474 aa12.48□□□□□ -0.41
SHMT2-228ENST00000557302 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.48□□□□□ -0.41
SHMT2-228ENST00000557302 A0A0G2JND7 137 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 NPIPA5E9PKD4 350 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 ACOT7O00154 380 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 TSPAN2O60636 221 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 NKX2-2O95096 273 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms