RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 ZNF763Q0D2J5 394 aa6.72□□□□□ -1.33
SCFD1-222ENST00000556768 SNTA1Q13424 505 aa6.72□□□□□ -1.33
SCFD1-222ENST00000556768 TCHHL1Q5QJ38 904 aaPredicted RBP6.72□□□□□ -1.33
SCFD1-222ENST00000556768 LIPMQ5VYY2 423 aa6.72□□□□□ -1.33
SCFD1-222ENST00000556768 TMEM64Q6YI46 380 aa6.72□□□□□ -1.33
SCFD1-222ENST00000556768 FGD2Q7Z6J4 655 aa6.72□□□□□ -1.33
SCFD1-222ENST00000556768 TICAM1Q8IUC6 712 aa6.72□□□□□ -1.33
SCFD1-222ENST00000556768 CHERPQ8IWX8 916 aaKnown RBP6.72□□□□□ -1.33
SCFD1-222ENST00000556768 SRRM1Q8IYB3 904 aaKnown RBP6.72□□□□□ -1.33
SCFD1-222ENST00000556768 PM20D2Q8IYS1 436 aa6.72□□□□□ -1.33
SCFD1-222ENST00000556768 CLYBLQ8N0X4 340 aa6.72□□□□□ -1.33
SCFD1-222ENST00000556768 RIBC1Q8N443 379 aaPredicted RBP6.72□□□□□ -1.33
SCFD1-222ENST00000556768 OR52R1Q8NGF1 315 aa6.72□□□□□ -1.33
SCFD1-222ENST00000556768 OR1J4Q8NGS1 313 aa6.72□□□□□ -1.33
SCFD1-222ENST00000556768 LILRB4Q8NHJ6 448 aa6.72□□□□□ -1.33
SCFD1-222ENST00000556768 FAM76AQ8TAV0 307 aa6.72□□□□□ -1.33
SCFD1-222ENST00000556768 C16orf78Q8WTQ4 265 aa6.72□□□□□ -1.33
SCFD1-222ENST00000556768 ADIPOR1Q96A54 375 aa6.72□□□□□ -1.33
SCFD1-222ENST00000556768 EXOSC8Q96B26 276 aaKnown RBP6.72□□□□□ -1.33
SCFD1-222ENST00000556768 CNRIP1Q96F85 164 aaPredicted RBP6.72□□□□□ -1.33
SCFD1-222ENST00000556768 SPOCK3Q9BQ16 436 aa6.72□□□□□ -1.33
SCFD1-222ENST00000556768 ZNF703Q9H7S9 590 aaPredicted RBP6.72□□□□□ -1.33
SCFD1-222ENST00000556768 EML4Q9HC35 981 aaKnown RBP6.72□□□□□ -1.33
SCFD1-222ENST00000556768 SH2D2AQ9NP31 389 aa6.72□□□□□ -1.33
SCFD1-222ENST00000556768 SLC35C2Q9NQQ7 365 aa6.72□□□□□ -1.33
SCFD1-222ENST00000556768 PNPLA3Q9NST1 481 aa6.72□□□□□ -1.33
SCFD1-222ENST00000556768 KLRF1Q9NZS2 232 aa6.72□□□□□ -1.33
SCFD1-222ENST00000556768 FRRS1LQ9P0K9 344 aa6.72□□□□□ -1.33
SCFD1-222ENST00000556768 OR10H1Q9Y4A9 318 aa6.72□□□□□ -1.33
SCFD1-222ENST00000556768 MYO7BQ6PIF6 2116 aa6.72□□□□□ -1.33
SCFD1-222ENST00000556768 APCP25054 2843 aa6.72□□□□□ -1.33
SCFD1-222ENST00000556768 A0A1W2PS29 197 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 AHRRA9YTQ3 701 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 G3V2L1 256 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 SLC28A1O00337 649 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 ADAM10O14672 748 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 PLIN3O60664 434 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 TRIM13O60858 407 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 REM1O75628 298 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 PPM1BO75688 479 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 RSL1D1O76021 490 aaKnown RBP6.71□□□□□ -1.33
SCFD1-222ENST00000556768 SLITRK5O94991 958 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 PROCP04070 461 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 SHBGP04278 402 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 ABCB1P08183 1280 aaPredicted RBP6.71□□□□□ -1.33
SCFD1-222ENST00000556768 DDCP20711 480 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 S1PR1P21453 382 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 GPX3P22352 226 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 IL12BP29460 328 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 NTSP30990 170 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 CASP3P42574 277 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 ZFP36L2P47974 494 aaKnown RBP6.71□□□□□ -1.33
SCFD1-222ENST00000556768 C2orf80Q0P641 193 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 EXOSC7Q15024 291 aaKnown RBP6.71□□□□□ -1.33
SCFD1-222ENST00000556768 ZNHIT3Q15649 155 aaPredicted RBP6.71□□□□□ -1.33
SCFD1-222ENST00000556768 TRMT12Q53H54 448 aaKnown RBP6.71□□□□□ -1.33
SCFD1-222ENST00000556768 SLC30A6Q6NXT4 461 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 FAM180BQ6P0A1 224 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 FAM111BQ6SJ93 734 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 SCIMPQ6UWF3 145 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 FRMD7Q6ZUT3 714 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 C4orf33Q8N1A6 199 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 ZNF441Q8N8Z8 693 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 NEIL3Q8TAT5 605 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 SPPL2AQ8TCT8 520 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 ZNF675Q8TD23 568 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 MZB1Q8WU39 189 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 CTHRC1Q96CG8 243 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 APIPQ96GX9 242 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 GNRHR2Q96P88 292 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 KCNA7Q96RP8 456 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 TTYH2Q9BSA4 534 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 ANGPTL4Q9BY76 406 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 ROPN1BQ9BZX4 212 aaPredicted RBP6.71□□□□□ -1.33
SCFD1-222ENST00000556768 NXF5Q9H1B4 397 aaKnown RBP6.71□□□□□ -1.33
SCFD1-222ENST00000556768 EPB41L4BQ9H329 900 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 GSTO2Q9H4Y5 243 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 ROPN1Q9HAT0 212 aaPredicted RBP6.71□□□□□ -1.33
SCFD1-222ENST00000556768 SIRT5Q9NXA8 310 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 MAT2BQ9NZL9 334 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 MRTO4Q9UKD2 239 aaKnown RBP6.71□□□□□ -1.33
SCFD1-222ENST00000556768 RNF6Q9Y252 685 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 PLLPQ9Y342 182 aa6.71□□□□□ -1.33
SCFD1-222ENST00000556768 FRG2CA6NGY1 282 aa6.71□□□□□ -1.34
SCFD1-222ENST00000556768 OR6C70A6NIJ9 312 aa6.71□□□□□ -1.34
SCFD1-222ENST00000556768 PLOD3O60568 738 aa6.71□□□□□ -1.34
SCFD1-222ENST00000556768 COQ9O75208 318 aa6.71□□□□□ -1.34
SCFD1-222ENST00000556768 TRIM3O75382 744 aaPredicted RBP6.71□□□□□ -1.34
SCFD1-222ENST00000556768 CBR3O75828 277 aa6.71□□□□□ -1.34
SCFD1-222ENST00000556768 CLPSP04118 112 aa6.71□□□□□ -1.34
SCFD1-222ENST00000556768 RFPL3SP0C7P2 107 aa6.71□□□□□ -1.34
SCFD1-222ENST00000556768 ARAFP10398 606 aa6.71□□□□□ -1.34
SCFD1-222ENST00000556768 CHN1P15882 459 aa6.71□□□□□ -1.34
SCFD1-222ENST00000556768 TRPC1P48995 793 aa6.71□□□□□ -1.34
SCFD1-222ENST00000556768 CLK3P49761 638 aaKnown RBP6.71□□□□□ -1.34
SCFD1-222ENST00000556768 NCBP2P52298 156 aaKnown RBP eCLIP6.71□□□□□ -1.346e-13■■□□□ 13
SCFD1-222ENST00000556768 PSMD4P55036 377 aaKnown RBP6.71□□□□□ -1.34
SCFD1-222ENST00000556768 MRPS35P82673 323 aaKnown RBP6.71□□□□□ -1.34
SCFD1-222ENST00000556768 DUSP8Q13202 625 aa6.71□□□□□ -1.34
SCFD1-222ENST00000556768 EFR3AQ14156 821 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms