RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	ZNF550	Q7Z398	422 aa		11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	CMC1	Q7Z7K0	106 aa		11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	MMGT1	Q8N4V1	131 aa		11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	OR52R1	Q8NGF1	315 aa		11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	RHEBL1	Q8TAI7	183 aa		11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	TRPC4AP	Q8TEL6	797 aa		11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	TMBIM1	Q969X1	311 aa		11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	ZC3HAV1L	Q96H79	300 aa	Known RBP	11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	ZNF845	Q96IR2	970 aa	Predicted RBP	11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	MARK4	Q96L34	752 aa		11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	LRRC1	Q9BTT6	524 aa		11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	SAYSD1	Q9NPB0	183 aa		11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	MAT2B	Q9NZL9	334 aa		11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	DKKL1	Q9UK85	242 aa		11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	CES1P1	Q9UKY3	287 aa		11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	ACOT9	Q9Y305	439 aa		11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	PLLP	Q9Y342	182 aa		11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	PCDHA9	Q9Y5H5	950 aa		11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	TNPO3	Q9Y5L0	923 aa	Known RBP	11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	RTTN	Q86VV8	2226 aa		11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	CCDC189	A1A4V9	331 aa		11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	C1orf226	A1L170	272 aa		11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	FRG2C	A6NGY1	282 aa		11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	LRRC14B	A6NHZ5	514 aa		11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	T	O15178	435 aa		11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	EIF3H	O15372	352 aa	Known RBP eCLIP	11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	EMC8	O43402	210 aa		11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	ERAL1	O75616	437 aa	Known RBP	11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	CLDN9	O95484	217 aa		11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	CBX7	O95931	251 aa		11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	TUBB	P07437	444 aa		11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	PEPD	P12955	493 aa		11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	PAX1	P15863	534 aa		11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	TBXA2R	P21731	343 aa		11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	TCEA1	P23193	301 aa	Known RBP	11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	DPP4	P27487	766 aa		11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	LOX	P28300	417 aa	Predicted RBP	11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	EMD	P50402	254 aa		11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	MAPK12	P53778	367 aa		11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	EEFSEC	P57772	596 aa	Known RBP	11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	GPX6	P59796	221 aa		11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	SIRPA	P78324	504 aa		11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	SLMAP	Q14BN4	828 aa		11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	FAM83E	Q2M2I3	478 aa		11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	TRMT12	Q53H54	448 aa	Known RBP	11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	ANKRD34A	Q69YU3	496 aa		11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	GOLGA7	Q7Z5G4	137 aa		11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	MEIOB	Q8N635	442 aa		11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	PPM1N	Q8N819	430 aa		11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	ZNF610	Q8N9Z0	462 aa		11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	TMEM171	Q8WVE6	324 aa		11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	ATP6V1E2	Q96A05	226 aa		11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	ADO	Q96SZ5	270 aa		11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	PIGQ	Q9BRB3	760 aa		11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	CXorf56	Q9H5V9	222 aa		11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	ZNF701	Q9NV72	531 aa	Predicted RBP	11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	HEY2	Q9UBP5	337 aa		11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	MED12	Q93074	2177 aa		11.43	□□□□□ -0.58
SHMT2-223	ENST00000556689	TMCC2	O75069	709 aa		11.42	□□□□□ -0.58
SHMT2-223	ENST00000556689	TNFRSF21	O75509	655 aa		11.42	□□□□□ -0.58
SHMT2-223	ENST00000556689	CGA	P01215	116 aa		11.42	□□□□□ -0.58
SHMT2-223	ENST00000556689	GSTA2	P09210	222 aa		11.42	□□□□□ -0.58
SHMT2-223	ENST00000556689	CD8B	P10966	210 aa		11.42	□□□□□ -0.58
SHMT2-223	ENST00000556689	CCKAR	P32238	428 aa		11.42	□□□□□ -0.58
SHMT2-223	ENST00000556689	ARL1	P40616	181 aa	Predicted RBP	11.42	□□□□□ -0.58
SHMT2-223	ENST00000556689	DSCR4	P56555	118 aa	Predicted RBP	11.42	□□□□□ -0.58
SHMT2-223	ENST00000556689	TNK1	Q13470	666 aa		11.42	□□□□□ -0.58
SHMT2-223	ENST00000556689	EFR3A	Q14156	821 aa		11.42	□□□□□ -0.58
SHMT2-223	ENST00000556689	FGFBP1	Q14512	234 aa		11.42	□□□□□ -0.58
SHMT2-223	ENST00000556689	ACAP2	Q15057	778 aa		11.42	□□□□□ -0.58
SHMT2-223	ENST00000556689	TTC19	Q6DKK2	380 aa	Predicted RBP	11.42	□□□□□ -0.58
SHMT2-223	ENST00000556689	METTL2B	Q6P1Q9	378 aa	Known RBP	11.42	□□□□□ -0.58
SHMT2-223	ENST00000556689	C22orf34	Q6ZV56	151 aa		11.42	□□□□□ -0.58
SHMT2-223	ENST00000556689	SH2D5	Q6ZV89	423 aa		11.42	□□□□□ -0.58
SHMT2-223	ENST00000556689	CCDC91	Q7Z6B0	441 aa		11.42	□□□□□ -0.58
SHMT2-223	ENST00000556689	UBQLNL	Q8IYU4	475 aa		11.42	□□□□□ -0.58
SHMT2-223	ENST00000556689	METTL4	Q8N3J2	472 aa		11.42	□□□□□ -0.58
SHMT2-223	ENST00000556689	GBP7	Q8N8V2	638 aa	Predicted RBP	11.42	□□□□□ -0.58
SHMT2-223	ENST00000556689	KCTD4	Q8WVF5	259 aa		11.42	□□□□□ -0.58
SHMT2-223	ENST00000556689	IGFBPL1	Q8WX77	278 aa		11.42	□□□□□ -0.58
SHMT2-223	ENST00000556689	FIG4	Q92562	907 aa		11.42	□□□□□ -0.58
SHMT2-223	ENST00000556689	CAVIN3	Q969G5	261 aa		11.42	□□□□□ -0.58
SHMT2-223	ENST00000556689	SLC35A4	Q96G79	324 aa		11.42	□□□□□ -0.58
SHMT2-223	ENST00000556689	CDK15	Q96Q40	435 aa		11.42	□□□□□ -0.58
SHMT2-223	ENST00000556689	MRPL1	Q9BYD6	325 aa	Known RBP	11.42	□□□□□ -0.58
SHMT2-223	ENST00000556689	KLHL4	Q9C0H6	718 aa		11.42	□□□□□ -0.58
SHMT2-223	ENST00000556689	NOL11	Q9H8H0	719 aa	Known RBP	11.42	□□□□□ -0.58
SHMT2-223	ENST00000556689	GPR55	Q9Y2T6	319 aa	Predicted RBP	11.42	□□□□□ -0.58
SHMT2-223	ENST00000556689	ZNF780B	Q9Y6R6	833 aa		11.42	□□□□□ -0.58
SHMT2-223	ENST00000556689		A0A087X1B8	175 aa		11.41	□□□□□ -0.58
SHMT2-223	ENST00000556689	OR7A17	O14581	309 aa		11.41	□□□□□ -0.58
SHMT2-223	ENST00000556689	TSPAN2	O60636	221 aa		11.41	□□□□□ -0.58
SHMT2-223	ENST00000556689	BCAS2	O75934	225 aa	Predicted RBP	11.41	□□□□□ -0.58
SHMT2-223	ENST00000556689	SIX3	O95343	332 aa	Predicted RBP	11.41	□□□□□ -0.58
SHMT2-223	ENST00000556689	PCSK2	P16519	638 aa		11.41	□□□□□ -0.58
SHMT2-223	ENST00000556689	GRK2	P25098	689 aa		11.41	□□□□□ -0.58
SHMT2-223	ENST00000556689	KRT20	P35900	424 aa		11.41	□□□□□ -0.58
SHMT2-223	ENST00000556689	ATP5J2	P56134	94 aa		11.41	□□□□□ -0.58
SHMT2-223	ENST00000556689	B3GALT5-AS1	P59052	145 aa		11.41	□□□□□ -0.58
SHMT2-223	ENST00000556689	CAV1	Q03135	178 aa		11.41	□□□□□ -0.58

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