RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 PTMAP06454 111 aaKnown RBP3.25□□□□□ -1.89
SCFD1-221ENST00000556534 IDSP22304 550 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 RPA1P27694 616 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 PTPN4P29074 926 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 IL2RGP31785 369 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 POU3F4P49335 361 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 GPC3P51654 580 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 SGSHP51688 502 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 HSD17B7P56937 341 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 POLR2FP61218 127 aaKnown RBP3.25□□□□□ -1.89
SCFD1-221ENST00000556534 PPP1R8Q12972 351 aaKnown RBP3.25□□□□□ -1.89
SCFD1-221ENST00000556534 ZIC1Q15915 447 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 ZNF79Q15937 498 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 QRICH1Q2TAL8 776 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 ZNF699Q32M78 642 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 VASH2Q86V25 355 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 RANBP3LQ86VV4 465 aaPredicted RBP3.25□□□□□ -1.89
SCFD1-221ENST00000556534 UNC5CLQ8IV45 518 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 ELMOD2Q8IZ81 293 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 Q8N9G6 341 aaPredicted RBP3.25□□□□□ -1.89
SCFD1-221ENST00000556534 MLKLQ8NB16 471 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 TMEM37Q8WXS4 190 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 TMEM186Q96B77 213 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 C11orf24Q96F05 449 aaPredicted RBP3.25□□□□□ -1.89
SCFD1-221ENST00000556534 VSIG2Q96IQ7 327 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 DEFB118Q96PH6 123 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 FAM111AQ96PZ2 611 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 NAP1L3Q99457 506 aaPredicted RBP3.25□□□□□ -1.89
SCFD1-221ENST00000556534 APOOQ9BUR5 198 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 TEX13BQ9BXU2 312 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 KRT23Q9C075 422 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 ANAPC11Q9NYG5 84 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 ACTR3BQ9P1U1 418 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 LHX3Q9UBR4 397 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 TRIM10Q9UDY6 481 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 BLOC1S6Q9UL45 172 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 CLEC4EQ9ULY5 219 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 MOKQ9UQ07 419 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 KLF2Q9Y5W3 355 aaPredicted RBP3.25□□□□□ -1.89
SCFD1-221ENST00000556534 ZMYM6O95789 1325 aa3.24□□□□□ -1.89
SCFD1-221ENST00000556534 TRBV2A0A0J9YWF9 115 aa3.24□□□□□ -1.89
SCFD1-221ENST00000556534 A0A0U1RRA0 63 aa3.24□□□□□ -1.89
SCFD1-221ENST00000556534 RGSL1A5PLK6 1076 aa3.24□□□□□ -1.89
SCFD1-221ENST00000556534 SLC17A2O00624 439 aa3.24□□□□□ -1.89
SCFD1-221ENST00000556534 BUB1O43683 1085 aa3.24□□□□□ -1.89
SCFD1-221ENST00000556534 ECDO95905 644 aaPredicted RBP3.24□□□□□ -1.89
SCFD1-221ENST00000556534 HOXB7P09629 217 aa3.24□□□□□ -1.89
SCFD1-221ENST00000556534 ALPIP09923 528 aa3.24□□□□□ -1.89
SCFD1-221ENST00000556534 P0C879 139 aa3.24□□□□□ -1.89
SCFD1-221ENST00000556534 ETS1P14921 441 aa3.24□□□□□ -1.89
SCFD1-221ENST00000556534 DESP17661 470 aa3.24□□□□□ -1.89
SCFD1-221ENST00000556534 CAMLGP49069 296 aa3.24□□□□□ -1.89
SCFD1-221ENST00000556534 HNRNPFP52597 415 aaKnown RBP3.24□□□□□ -1.89
SCFD1-221ENST00000556534 SRP54P61011 504 aaKnown RBP3.24□□□□□ -1.89
SCFD1-221ENST00000556534 HTD2P86397 168 aa3.24□□□□□ -1.89
SCFD1-221ENST00000556534 CMPK2Q5EBM0 449 aa3.24□□□□□ -1.89
SCFD1-221ENST00000556534 NEK5Q6P3R8 708 aa3.24□□□□□ -1.89
SCFD1-221ENST00000556534 DPY19L2P2Q6ZN68 376 aa3.24□□□□□ -1.89
SCFD1-221ENST00000556534 MIER3Q7Z3K6 550 aa3.24□□□□□ -1.89
SCFD1-221ENST00000556534 ADAMTSL2Q86TH1 951 aa3.24□□□□□ -1.89
SCFD1-221ENST00000556534 YRDCQ86U90 279 aaKnown RBP3.24□□□□□ -1.89
SCFD1-221ENST00000556534 AMZ2Q86W34 360 aa3.24□□□□□ -1.89
SCFD1-221ENST00000556534 KRTAP11-1Q8IUC1 163 aa3.24□□□□□ -1.89
SCFD1-221ENST00000556534 UBQLNLQ8IYU4 475 aa3.24□□□□□ -1.89
SCFD1-221ENST00000556534 ZBTB44Q8NCP5 570 aa3.24□□□□□ -1.89
SCFD1-221ENST00000556534 ZNF397Q8NF99 534 aaPredicted RBP3.24□□□□□ -1.89
SCFD1-221ENST00000556534 RFESDQ8TAC1 157 aa3.24□□□□□ -1.89
SCFD1-221ENST00000556534 EXOC6Q8TAG9 804 aa3.24□□□□□ -1.89
SCFD1-221ENST00000556534 FAF2Q96CS3 445 aa3.24□□□□□ -1.89
SCFD1-221ENST00000556534 ZNF414Q96IQ9 312 aa3.24□□□□□ -1.89
SCFD1-221ENST00000556534 ZIM3Q96PE6 472 aa3.24□□□□□ -1.89
SCFD1-221ENST00000556534 TEX13AQ9BXU3 409 aaPredicted RBP3.24□□□□□ -1.89
SCFD1-221ENST00000556534 ALG9Q9H6U8 611 aa3.24□□□□□ -1.89
SCFD1-221ENST00000556534 HPS4Q9NQG7 708 aa3.24□□□□□ -1.89
SCFD1-221ENST00000556534 TAS2R3Q9NYW6 316 aa3.24□□□□□ -1.89
SCFD1-221ENST00000556534 NDUFA13Q9P0J0 144 aa3.24□□□□□ -1.89
SCFD1-221ENST00000556534 FAM153AQ9UHL3 310 aa3.24□□□□□ -1.89
SCFD1-221ENST00000556534 HOOK1Q9UJC3 728 aaKnown RBP3.24□□□□□ -1.89
SCFD1-221ENST00000556534 E7ENQ6 273 aa3.23□□□□□ -1.89
SCFD1-221ENST00000556534 K7EPI3 171 aa3.23□□□□□ -1.89
SCFD1-221ENST00000556534 CFLARO15519 480 aa3.23□□□□□ -1.89
SCFD1-221ENST00000556534 SLC2A10O95528 541 aa3.23□□□□□ -1.89
SCFD1-221ENST00000556534 PTBP3O95758 552 aaKnown RBP3.23□□□□□ -1.89
SCFD1-221ENST00000556534 IGHDP01880 384 aa3.23□□□□□ -1.89
SCFD1-221ENST00000556534 CYP11B1P15538 503 aa3.23□□□□□ -1.89
SCFD1-221ENST00000556534 SFNP31947 248 aa3.23□□□□□ -1.89
SCFD1-221ENST00000556534 ALDH3B2P48448 385 aa3.23□□□□□ -1.89
SCFD1-221ENST00000556534 GAMTQ14353 236 aa3.23□□□□□ -1.89
SCFD1-221ENST00000556534 HERC4Q5GLZ8 1057 aaPredicted RBP3.23□□□□□ -1.89
SCFD1-221ENST00000556534 C9orf129Q5T035 196 aaKnown RBP3.23□□□□□ -1.89
SCFD1-221ENST00000556534 GALNT17Q6IS24 598 aa3.23□□□□□ -1.89
SCFD1-221ENST00000556534 GPR65Q8IYL9 337 aa3.23□□□□□ -1.89
SCFD1-221ENST00000556534 CCNYQ8ND76 341 aa3.23□□□□□ -1.89
SCFD1-221ENST00000556534 TMEM185AQ8NFB2 350 aa3.23□□□□□ -1.89
SCFD1-221ENST00000556534 DLX4Q92988 240 aaPredicted RBP3.23□□□□□ -1.89
SCFD1-221ENST00000556534 CASD1Q96PB1 797 aa3.23□□□□□ -1.89
SCFD1-221ENST00000556534 OR5M11Q96RB7 305 aa3.23□□□□□ -1.89
SCFD1-221ENST00000556534 CBWD1Q9BRT8 395 aa3.23□□□□□ -1.89
SCFD1-221ENST00000556534 SIRPDQ9H106 197 aa3.23□□□□□ -1.89
SCFD1-221ENST00000556534 MIEF1Q9NQG6 463 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms