RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 TPOP07202 933 aa11.55□□□□□ -0.56
SHMT2-207ENST00000553837 CKMT1AP12532 417 aa11.55□□□□□ -0.56
SHMT2-207ENST00000553837 HOXB3P14651 431 aaPredicted RBP11.55□□□□□ -0.56
SHMT2-207ENST00000553837 PTBP1P26599 531 aaKnown RBP eCLIP11.55□□□□□ -0.56
SHMT2-207ENST00000553837 SSTR4P31391 388 aa11.55□□□□□ -0.56
SHMT2-207ENST00000553837 CDH12P55289 794 aa11.55□□□□□ -0.56
SHMT2-207ENST00000553837 PPP3R1P63098 170 aa11.55□□□□□ -0.56
SHMT2-207ENST00000553837 CNTN1Q12860 1018 aa11.55□□□□□ -0.56
SHMT2-207ENST00000553837 MLLT11Q13015 90 aaPredicted RBP11.55□□□□□ -0.56
SHMT2-207ENST00000553837 SCARB2Q14108 478 aa11.55□□□□□ -0.56
SHMT2-207ENST00000553837 SF3A2Q15428 464 aaKnown RBP11.55□□□□□ -0.56
SHMT2-207ENST00000553837 EXOC3L2Q2M3D2 409 aa11.55□□□□□ -0.56
SHMT2-207ENST00000553837 COL28A1Q2UY09 1125 aa11.55□□□□□ -0.56
SHMT2-207ENST00000553837 PRAMEF14Q5SWL7 426 aa11.55□□□□□ -0.56
SHMT2-207ENST00000553837 GCNT6Q5T4J0 391 aa11.55□□□□□ -0.56
SHMT2-207ENST00000553837 PRAMEF13Q5VWM6 474 aa11.55□□□□□ -0.56
SHMT2-207ENST00000553837 ERN2Q76MJ5 926 aaKnown RBP11.55□□□□□ -0.56
SHMT2-207ENST00000553837 C16orf62Q7Z3J2 963 aa11.55□□□□□ -0.56
SHMT2-207ENST00000553837 GLCCI1Q86VQ1 547 aa11.55□□□□□ -0.56
SHMT2-207ENST00000553837 COMMD7Q86VX2 200 aa11.55□□□□□ -0.56
SHMT2-207ENST00000553837 FAM46DQ8NEK8 389 aa11.55□□□□□ -0.56
SHMT2-207ENST00000553837 UPRTQ96BW1 309 aa11.55□□□□□ -0.56
SHMT2-207ENST00000553837 INTS12Q96CB8 462 aaKnown RBP11.55□□□□□ -0.56
SHMT2-207ENST00000553837 COX14Q96I36 57 aa11.55□□□□□ -0.56
SHMT2-207ENST00000553837 MED18Q9BUE0 208 aa11.55□□□□□ -0.56
SHMT2-207ENST00000553837 DPEP2Q9H4A9 486 aa11.55□□□□□ -0.56
SHMT2-207ENST00000553837 FOLH1BQ9HBA9 442 aa11.55□□□□□ -0.56
SHMT2-207ENST00000553837 SLC25A19Q9HC21 320 aa11.55□□□□□ -0.56
SHMT2-207ENST00000553837 SLAMF7Q9NQ25 335 aa11.55□□□□□ -0.56
SHMT2-207ENST00000553837 CUEDC1Q9NWM3 386 aaPredicted RBP11.55□□□□□ -0.56
SHMT2-207ENST00000553837 TXNL4BQ9NX01 149 aaKnown RBP11.55□□□□□ -0.56
SHMT2-207ENST00000553837 GPR34Q9UPC5 381 aa11.55□□□□□ -0.56
SHMT2-207ENST00000553837 CORO2BQ9UQ03 480 aa11.55□□□□□ -0.56
SHMT2-207ENST00000553837 DOCK9Q9BZ29 2069 aa11.55□□□□□ -0.56
SHMT2-207ENST00000553837 PRAMEF33A0A0G2JMD5 474 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 ZAR1LA6NP61 321 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 INMT-MINDY4F8WBC2 141 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 PRAMEF10O60809 474 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 RAF1P04049 648 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 APEX1P27695 318 aaKnown RBP11.54□□□□□ -0.56
SHMT2-207ENST00000553837 PSMB5P28074 263 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 INPP1P49441 399 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 GRK1Q15835 563 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 AANATQ16613 207 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 HIST2H2AA3Q6FI13 130 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 TMIGD1Q6UXZ0 262 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 PHC2Q8IXK0 858 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 NANOGP1Q8N7R0 232 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 PROKR2Q8NFJ6 384 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 CREB3L1Q96BA8 519 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 ARMC5Q96C12 935 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 ASB16Q96NS5 453 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 GFM1Q96RP9 751 aaKnown RBP11.54□□□□□ -0.56
SHMT2-207ENST00000553837 PIGUQ9H490 435 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 PPP1R3EQ9H7J1 279 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 CXorf36Q9H7Y0 433 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 GALNT9Q9HCQ5 603 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 EVA1BQ9NVM1 165 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 EMC3Q9P0I2 261 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 CLEC2DQ9UHP7 191 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 SLC6A14Q9UN76 642 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 C2orf16Q68DN1 1984 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 GRXCR1A8MXD5 290 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 WWP2O00308 870 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 PLPP1O14494 284 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 WDPCPO95876 746 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 IFNA14P01570 189 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 CRISP1P54107 249 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 BTG1P62324 171 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 TEAD4Q15561 434 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 PIP5KL1Q5T9C9 394 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 RNLSQ5VYX0 342 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 TYW3Q6IPR3 259 aaKnown RBP11.54□□□□□ -0.56
SHMT2-207ENST00000553837 ZNF704Q6ZNC4 412 aaPredicted RBP11.54□□□□□ -0.56
SHMT2-207ENST00000553837 DBX2Q6ZNG2 339 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 SLC9B2Q86UD5 537 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 PDZD3Q86UT5 571 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 LRRC17Q8N6Y2 441 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 KCT2Q8NC54 265 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 SLC22A8Q8TCC7 542 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 CHFRQ96EP1 664 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 PDXPQ96GD0 296 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 KCTD7Q96MP8 289 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 MENTQ9BUN1 341 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 FZD3Q9NPG1 666 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 PRSS16Q9NQE7 514 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 PTTG3PQ9NZH4 202 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 MGAT4AQ9UM21 535 aa11.54□□□□□ -0.56
SHMT2-207ENST00000553837 DENND4AQ7Z401 1863 aa11.53□□□□□ -0.56
SHMT2-207ENST00000553837 A0A1W2PRB8 838 aa11.53□□□□□ -0.56
SHMT2-207ENST00000553837 CIB4A0PJX0 185 aa11.53□□□□□ -0.56
SHMT2-207ENST00000553837 FEZF1A0PJY2 475 aa11.53□□□□□ -0.56
SHMT2-207ENST00000553837 IGLON5A6NGN9 336 aa11.53□□□□□ -0.56
SHMT2-207ENST00000553837 ZNF98A6NK75 572 aa11.53□□□□□ -0.56
SHMT2-207ENST00000553837 C5orf67F2Z3F1 127 aa11.53□□□□□ -0.56
SHMT2-207ENST00000553837 VEGFDO43915 354 aa11.53□□□□□ -0.56
SHMT2-207ENST00000553837 ENTPD6O75354 484 aa11.53□□□□□ -0.56
SHMT2-207ENST00000553837 IFNA7P01567 189 aa11.53□□□□□ -0.56
SHMT2-207ENST00000553837 PCCBP05166 539 aa11.53□□□□□ -0.56
SHMT2-207ENST00000553837 CLEC2LP0C7M8 214 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms