RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 PAPD4Q6PIY7 484 aaKnown RBP3.27□□□□□ -1.89
LIMA1-206ENST00000550611 ARSKQ6UWY0 536 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 PRSS41Q7RTY9 318 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 VN1R4Q7Z5H5 301 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 RPS19BP1Q86WX3 136 aaKnown RBP3.27□□□□□ -1.89
LIMA1-206ENST00000550611 KRT222Q8N1A0 295 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 KIF2BQ8N4N8 673 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 SLC5A8Q8N695 610 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 OR9A1PQ8NGU1 263 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 OR9A4Q8NGU2 314 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 OR4L1Q8NH43 312 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 OR51Q1Q8NH59 317 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 ACTL9Q8TC94 416 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 METTL21AQ8WXB1 218 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 SMPDL3AQ92484 453 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 KRT35Q92764 455 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 CABS1Q96KC9 395 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 PRPF18Q99633 342 aaKnown RBP3.27□□□□□ -1.89
LIMA1-206ENST00000550611 CHP1Q99653 195 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 TTYH2Q9BSA4 534 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 PTDSS2Q9BVG9 487 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 C19orf24Q9BVV8 132 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 HEMGNQ9BXL5 484 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 SLC25A32Q9H2D1 315 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 CXorf36Q9H7Y0 433 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 PLEKHF2Q9H8W4 249 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 ZDHHC11Q9H8X9 412 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 MRPS30Q9NP92 439 aaKnown RBP3.27□□□□□ -1.89
LIMA1-206ENST00000550611 DUSP22Q9NRW4 184 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 DEPPQ9NTK1 212 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 GRHPRQ9UBQ7 328 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 C19orf25Q9UFG5 118 aaPredicted RBP3.27□□□□□ -1.89
LIMA1-206ENST00000550611 SLC2A6Q9UGQ3 507 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 TTC7AQ9ULT0 858 aaPredicted RBP3.27□□□□□ -1.89
LIMA1-206ENST00000550611 R3HDM2Q9Y2K5 976 aaKnown RBP3.27□□□□□ -1.89
LIMA1-206ENST00000550611 FAM215AQ9Y5M1 114 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 HCFC1P51610 2035 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 PINLYPA6NC86 204 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 TTC36A6NLP5 189 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 POC1B-GALNT4F8VUJ3 575 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 KLRC4-KLRK1H3BQV0 150 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 SGK494L7N484 410 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 PRMT5O14744 637 aaPredicted RBP3.26□□□□□ -1.89
LIMA1-206ENST00000550611 HAT1O14929 419 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 TFECO14948 347 aaPredicted RBP3.26□□□□□ -1.89
LIMA1-206ENST00000550611 PSMD3O43242 534 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 SPOPO43791 374 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 KIF5CO60282 957 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 LCMT2O60294 686 aaKnown RBP3.26□□□□□ -1.89
LIMA1-206ENST00000550611 CCNT2O60583 730 aaKnown RBP3.26□□□□□ -1.89
LIMA1-206ENST00000550611 VPS26AO75436 327 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 PSIP1O75475 530 aaKnown RBP3.26□□□□□ -1.89
LIMA1-206ENST00000550611 PDE9AO76083 593 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 GLSO94925 669 aaPredicted RBP3.26□□□□□ -1.89
LIMA1-206ENST00000550611 SERPINC1P01008 464 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 RAF1P04049 648 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 UQCRHP07919 91 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 IL6RP08887 468 aaPredicted RBP3.26□□□□□ -1.89
LIMA1-206ENST00000550611 T-ENOLP0DO92 83 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 TNNT1P13805 278 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 EZRP15311 586 aaKnown RBP3.26□□□□□ -1.89
LIMA1-206ENST00000550611 EGR1P18146 543 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 CD53P19397 219 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 RPS3P23396 243 aaKnown RBP eCLIP3.26□□□□□ -1.89
LIMA1-206ENST00000550611 ADRA1DP25100 572 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 CALRP27797 417 aaKnown RBP3.26□□□□□ -1.89
LIMA1-206ENST00000550611 ATP5DP30049 168 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 PRKAR1BP31321 381 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 HSD17B2P37059 387 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 PEX19P40855 299 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 RFC3P40938 356 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 GRIA1P42261 906 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 XCR1P46094 333 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 ZFP36L2P47974 494 aaKnown RBP3.26□□□□□ -1.89
LIMA1-206ENST00000550611 CYB561P49447 251 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 GPR143P51810 404 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 UBASH3AP57075 661 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 OR4D2P58180 307 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 TAS2R50P59544 299 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 EIF3EP60228 445 aaKnown RBP3.26□□□□□ -1.89
LIMA1-206ENST00000550611 DEFA6Q01524 100 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 ACTN3Q08043 901 aaPredicted RBP3.26□□□□□ -1.89
LIMA1-206ENST00000550611 GALNT1Q10472 559 aaPredicted RBP3.26□□□□□ -1.89
LIMA1-206ENST00000550611 FOXO1Q12778 655 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 GPS1Q13098 491 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 ABRAXAS2Q15018 415 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 NSDHLQ15738 373 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 NDUFA9Q16795 377 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 HYAL4Q2M3T9 481 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 SLC25A35Q3KQZ1 300 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 FBXL19-AS1Q494R0 122 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 ANKRD20A4Q4UJ75 823 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 ODF2Q5BJF6 829 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 RIPPLY2Q5TAB7 128 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 ICE2Q659A1 982 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 SFRP4Q6FHJ7 346 aaPredicted RBP3.26□□□□□ -1.89
LIMA1-206ENST00000550611 PODNL1Q6PEZ8 512 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 BHLHB9Q6PI77 547 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 AFTPHQ6ULP2 937 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 SUSD1Q6UWL2 747 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms