RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 FARS2O95363 451 aaKnown RBP13.48□□□□□ -0.25
LIMS1-215ENST00000544547 ATP1B2P14415 290 aaPredicted RBP13.48□□□□□ -0.25
LIMS1-215ENST00000544547 HNF1BP35680 557 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 WDR5P61964 334 aaKnown RBP13.48□□□□□ -0.25
LIMS1-215ENST00000544547 SLC14A2Q15849 920 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 AANATQ16613 207 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 TMC8Q8IU68 726 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.48□□□□□ -0.25
LIMS1-215ENST00000544547 SLAIN1Q8ND83 568 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 BBS10Q8TAM1 723 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 CREB3L4Q8TEY5 395 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 ACOT12Q8WYK0 555 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 SFXN2Q96NB2 322 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 NTMT1Q9BV86 223 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 WASH6PQ9NQA3 447 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 MN1Q10571 1320 aaPredicted RBP13.48□□□□□ -0.25
LIMS1-215ENST00000544547 HHLA1C9JL84 531 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 RASGRP1O95267 797 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 INHAP05111 366 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 HMGCLP35914 325 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 ADH7P40394 386 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 GCGRP47871 477 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 GIPRP48546 466 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 GBX2P52951 348 aaPredicted RBP13.48□□□□□ -0.25
LIMS1-215ENST00000544547 OR12D2P58182 307 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 CAP1Q01518 475 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 ALG11Q2TAA5 492 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 PLBD1Q6P4A8 553 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 POMZP3Q6PJE2 187 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 TEX261Q6UWH6 196 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 LKAAEAR1Q8TD35 194 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 CSNK1G1Q9HCP0 422 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 AK6Q9Y3D8 172 aaKnown RBP13.48□□□□□ -0.25
LIMS1-215ENST00000544547 U3KQ87 197 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 LTBP3Q9NS15 1303 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 KIAA1217Q5T5P2 1943 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 A0A0A6YYJ9 748 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 A0A1W2PRQ8 180 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 MTMR11A4FU01 709 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 RGS9O75916 674 aaPredicted RBP13.48□□□□□ -0.25
LIMS1-215ENST00000544547 POU3F3P20264 500 aaPredicted RBP13.48□□□□□ -0.25
LIMS1-215ENST00000544547 NT5EP21589 574 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 VAMP1P23763 118 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 MAT2AP31153 395 aaKnown RBP13.48□□□□□ -0.25
LIMS1-215ENST00000544547 ILF3Q12906 894 aaKnown RBP eCLIP13.48□□□□□ -0.251e-9■■■■□ 23.1
LIMS1-215ENST00000544547 HYAL4Q2M3T9 481 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 C6orf120Q7Z4R8 191 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 CPA6Q8N4T0 437 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 LMNTD1Q8N9Z9 388 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 KLHDC9Q8NEP7 349 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 FCAMRQ8WWV6 532 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 TCEAL4Q96EI5 215 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 S100A16Q96FQ6 103 aaKnown RBP13.48□□□□□ -0.25
LIMS1-215ENST00000544547 OR2M2Q96R28 347 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 IL17CQ9P0M4 197 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 SCP2D1Q9UJQ7 156 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 CFAP20Q9Y6A4 193 aaKnown RBP13.48□□□□□ -0.25
LIMS1-215ENST00000544547 CDH10Q9Y6N8 788 aa13.48□□□□□ -0.25
LIMS1-215ENST00000544547 METTL21EPA6NDL7 271 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 LEUTXA8MZ59 168 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 CDK2AP1O14519 115 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 ALPPP05187 535 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 ACRV1P26436 265 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 TMEM44Q2T9K0 475 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 PLK5Q496M5 336 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 MINDY4Q4G0A6 757 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 IL26Q9NPH9 171 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 GNG8Q9UK08 70 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 C13orf42A0A1B0GVH6 325 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 MCIDASD6RGH6 385 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 CA12O43570 354 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 RLN2P04090 185 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 PCCBP05166 539 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 ARFIP1P53367 373 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 ERVK-21P61565 698 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 ADAM8P78325 824 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 BEX5Q5H9J7 111 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 CPOQ8IVL8 374 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 FOXRED2Q8IWF2 684 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 MSRB3Q8IXL7 192 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 PM20D2Q8IYS1 436 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 TCTE3Q8IZS6 198 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 KIAA1958Q8N8K9 716 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 CASTOR1Q8WTX7 329 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 C7orf50Q9BRJ6 194 aaKnown RBP13.47□□□□□ -0.25
LIMS1-215ENST00000544547 DPEP2Q9H4A9 486 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 TLR9Q9NR96 1032 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 ZNF865P0CJ78 1059 aaPredicted RBP13.47□□□□□ -0.25
LIMS1-215ENST00000544547 PER3P56645 1201 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 ST3GAL3Q11203 375 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 FXNQ16595 210 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 TMEM69Q5SWH9 247 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 HES5Q5TA89 166 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 METTL2BQ6P1Q9 378 aaKnown RBP13.47□□□□□ -0.25
LIMS1-215ENST00000544547 CHST4Q8NCG5 386 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 ZNF563Q8TA94 476 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 PLD4Q96BZ4 506 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 METTL2AQ96IZ6 378 aaKnown RBP13.47□□□□□ -0.25
LIMS1-215ENST00000544547 MFFQ9GZY8 342 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 OR2S2Q9NQN1 319 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms